Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0965 ATGTCTGCAGTCGAAGCGGAGAAGAATGTGGAAGAAGAGAAGGAGGTGGTGAGAAGGGGAGAGCTCTTGTTCTGCGGTGGTACGAGTTGGGACATTATTGGTCGTCGTAAAGGTCCAGCTGACGGCAACTTGGTCTCTCCAACTCGGCTTCGCCCTCTCGTTGGGGTTGATATTCGATTCGTTGCATCTGGATGTGCATCTTGTCATTGCGTGGCTTTAGATGTTGAGGGGCGCTGCTATACATGGGGACGCAATGAGAAGGGGCAACTGGGTCATGGAGATACCATTCAGCGTGATAGGCCAACCGTGGTATCTGAACTTTCTAAACATAAAATTGTCAAAGCTGGAGCAGGGAGGAACCACACGGTGATTGTTACAGAGGATGGACATTCCCTTGCCTTTGGTTGGAATAAACATGGACAGCTAGGTTCGAGTTCTGTGAAAAATGAAATTGAATTATCTCCTGTTCGCTGTCTTGTGTCAGAAGTCAATTATGCTACTTGTGGTGGTGACTTCACCGTGTGGTTATCTTCTGTTGAAGGAACTTCTATACTTACTGCAGGGCTTCCACAGTATGGGCAGCTAGGACATGGAACAGACAACGAGTATAATTCCAAAGACAGTTCCGTGAGGTTGGTTTATGAAGCCCAACCACGTCCGCGGGCAATTGCTAAGCTATATGGTGAAACAATTGTCAAAGTGGCATGTGGAACAAATCACACAGTGGCGGTGGATAAGAATGGCTTCGTTTACACGTGGGGTTTTGGCGGCTATGGAAGGCTAGGGCATAGGGAGCAGAAGGATGAGTGGTCCCCACGTCGTGTGGATGCTTTTCGGGACAGAAATGTTCTGCCCCCTGATGCTGTGATTTCAGCTGGTTCTGTTAACTCTGCATGCACTGCAGGTGGAGGGCAATTGTATATGTGGGGCAAAATAAAGAATACAGGAGATGATTGGATGTATCCTAAGCCTCTGATGGACTTAAGTGGCTGGAACTTACGATGCATGGATTCAGGCAATATGCACCATTTTGTGGGGGCTGATTCTTCGTGTATAAGCTGGGGCCATGCTCAACATGGAGAACTGGGATATGGGCCTAATGCACAGAAGTCTTCAGCAGTACCCAAAAAGGTGGATATTCTTGACGGCATGCATGTTATGGGTGTTGCTTGTGGTATGGGCCATTCCATGGTCATTGTCGATGGAACAAATGTTGGTGAACGTCTTGATCAGCTTGATATATACGATGGGAAAGCTTCTGGTGAAGTAAATGAGGAACCTGTAAAGAAAGCTCCAGCGCCTAAGCAGAGTACAAAAAAGGGTGCAAAAGGTGGTGACAACTCCAAGAAGAAGAGGACGAAAGAATCATCTGAATCGGAGGAGGAGGAAGAGGATGATGAAGCGAGTGACGATGAGGAGCAAGAGAATGGCACGGCCAAGGGGAAACGGAAACGCGGCGGAAATAATTCTGGCAAAGCGAGAGGTAAAGCAAAAGGTTCAGGCCCCGGGAGAAATCGGTCTACAGTAAAAACGGGTAAGAGAGGAAGACCCCGTAAGTCTTGA 1563 0.4798 MSAVEAEKNVEEEKEVVRRGELLFCGGTSWDIIGRRKGPADGNLVSPTRLRPLVGVDIRFVASGCASCHCVALDVEGRCYTWGRNEKGQLGHGDTIQRDRPTVVSELSKHKIVKAGAGRNHTVIVTEDGHSLAFGWNKHGQLGSSSVKNEIELSPVRCLVSEVNYATCGGDFTVWLSSVEGTSILTAGLPQYGQLGHGTDNEYNSKDSSVRLVYEAQPRPRAIAKLYGETIVKVACGTNHTVAVDKNGFVYTWGFGGYGRLGHREQKDEWSPRRVDAFRDRNVLPPDAVISAGSVNSACTAGGGQLYMWGKIKNTGDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGADSSCISWGHAQHGELGYGPNAQKSSAVPKKVDILDGMHVMGVACGMGHSMVIVDGTNVGERLDQLDIYDGKASGEVNEEPVKKAPAPKQSTKKGAKGGDNSKKKRTKESSESEEEEEDDEASDDEEQENGTAKGKRKRGGNNSGKARGKAKGSGPGRNRSTVKTGKRGRPRKS 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0965 520 MobiDBLite consensus disorder prediction 459 473 - -
Lele04g0965 520 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 77 128 IPR000408 -
Lele04g0965 520 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 389 399 IPR000408 -
Lele04g0965 520 MobiDBLite consensus disorder prediction 417 433 - -
Lele04g0965 520 Pfam Regulator of chromosome condensation (RCC1) repeat 76 124 IPR000408 -
Lele04g0965 520 Pfam Regulator of chromosome condensation (RCC1) repeat 247 285 IPR000408 -
Lele04g0965 520 Pfam Regulator of chromosome condensation (RCC1) repeat 128 174 IPR000408 -
Lele04g0965 520 Pfam Regulator of chromosome condensation (RCC1) repeat 353 399 IPR000408 -
Lele04g0965 520 Pfam Regulator of chromosome condensation (RCC1) repeat 185 244 IPR000408 -
Lele04g0965 520 Gene3D - 4 209 IPR009091 -
Lele04g0965 520 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 129 179 IPR000408 -
Lele04g0965 520 MobiDBLite consensus disorder prediction 442 458 - -
Lele04g0965 520 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 234 244 IPR000408 -
Lele04g0965 520 PRINTS Chromosome condensation regulator RCC1 signature 78 94 IPR000408 -
Lele04g0965 520 PRINTS Chromosome condensation regulator RCC1 signature 112 125 IPR000408 -
Lele04g0965 520 PRINTS Chromosome condensation regulator RCC1 signature 131 147 IPR000408 -
Lele04g0965 520 PRINTS Chromosome condensation regulator RCC1 signature 250 264 IPR000408 -
Lele04g0965 520 PRINTS Chromosome condensation regulator RCC1 signature 234 250 IPR000408 -
Lele04g0965 520 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 182 247 IPR000408 -
Lele04g0965 520 MobiDBLite consensus disorder prediction 417 520 - -
Lele04g0965 520 SUPERFAMILY RCC1/BLIP-II 18 402 IPR009091 -
Lele04g0965 520 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 248 303 IPR000408 -
Lele04g0965 520 Gene3D - 210 407 IPR009091 -
Lele04g0965 520 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 349 402 IPR000408 -
Lele04g0965 520 PANTHER PROTEIN RCC2 7 500 IPR028641 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0965 Lele-ChrLele04 5961020 5965890 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0965 04 5961020 5965890 Lele04g0965 04 5961020 5965890 ECH
Lele01g0968 01 5599739 5604401 Lele04g0965 04 5961020 5965890 hybridization
Lele02g0971 02 5902056 5906941 Lele04g0965 04 5961020 5965890 hybridization