Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele01g0561 | ATGGCGCGGTGTAAATGTTCCATATTTGTTTTTTTTGTCTGAAATCAATCAACCATGGTTTTCTGGGTTTTTGGCTATGGTTCACTGGTGTGGAACCCAGGATTTGATTACGATGAGAAAATGGTTGGATTCATAAAGGACTATAGACGTGTATTTGATTTAGCATGTATTGATCACAGGGGTACACCTGAAAACCCTGCAAGAACTTGCACATTGGAGCCAAAAGAAGGGGCAGTTTGCTGGGGCACAGCGTATTGTGTTCGTGGAGGCCCTAAAAAGGAGAAACTGGCTATGCAGTATTTGGAGCGGAGGGAATGTGAATATGATCAAAAGACCCTTGTAGACTTTTACAAGGAAGGAGATTCAGTGAACCCTGCTTTAACTGGAGTTGTAGTATTCACATCTACCGCAGACAAAGCAAACAGATATTACCTGGGACCTGCTCCTTTGGAAGACATGGCTAGGCAAATAGCAACAGCCTTTGGTCCTTGTGGCAACAATAGAGATTATATCTACCGTTTAGAAAAGGCCATGTATGATATTGGACATGAGGACGATATAGTGATAGAGCTTGCTAATGAAGTGAGGAAGGTACTTGGGGCTGTGGGGAATGTGACGCCAAAGGAGACTTCTGCAGTTGGAGCAGCTCAACTTGCACAACCTTCTCACGTACCTATCCCAGCTCTCCAATTGCACTTACTTCCAGAGCCAATTGCGTAG | 720 | 0.4417 | MARCKCSIFVFFVXNQSTMVFWVFGYGSLVWNPGFDYDEKMVGFIKDYRRVFDLACIDHRGTPENPARTCTLEPKEGAVCWGTAYCVRGGPKKEKLAMQYLERRECEYDQKTLVDFYKEGDSVNPALTGVVVFTSTADKANRYYLGPAPLEDMARQIATAFGPCGNNRDYIYRLEKAMYDIGHEDDIVIELANEVRKVLGAVGNVTPKETSAVGAAQLAQPSHVPIPALQLHLLPEPIA | 239 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele01g0561 | 239 | Pfam | ChaC-like protein | 22 | 197 | IPR006840 | GO:0003839|GO:0006751 | |
| Lele01g0561 | 239 | FunFam | Gamma-glutamylcyclotransferase | 20 | 202 | - | - | |
| Lele01g0561 | 239 | ProSitePatterns | Glycosyl hydrolases family 5 signature. | 187 | 196 | IPR018087 | GO:0004553|GO:0005975 | |
| Lele01g0561 | 239 | CDD | GGCT_like | 23 | 128 | IPR013024 | - | |
| Lele01g0561 | 239 | Gene3D | - | 12 | 197 | - | - | |
| Lele01g0561 | 239 | PANTHER | CATION TRANSPORT PROTEIN CHAC-RELATED | 19 | 207 | IPR006840 | GO:0003839|GO:0006751 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele01g0561 | Lele-ChrLele01 | 3324554 | 3326556 | Dispersed/Wgd |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lele01g0561 | 01 | 3324554 | 3326556 | Lele01g0561 | 01 | 3324554 | 3326556 | ECH | |
| Lele01g0561 | 01 | 3324554 | 3326556 | Lele03g0564 | 03 | 3355060 | 3357174 | hybridization | |
| Lele01g0561 | 01 | 3324554 | 3326556 | Lele04g0571 | 04 | 3467271 | 3472733 | hybridization |