Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0550 ATGAGGATAACCGAAGCATGCTCCAGGATCATTGGAGACTTTTTACAAGGTTTCAGACGTTCACAAGAAAGCTCAAAGCCTCAAGTTGATCACAGTGATCATCCATGCAAGCCCCAGAATGTGCTCAGACTTGATGACAAGATGGTCAGTGCTCTCATCACTGTCTTTGGCATGCAAAACAATGGAAGAATCAAGAAGGAAAACGCAAGGCAAGTGGTAGAGAAGCTCGGTTTGCTATATAATGGTTCAGAGGAAGAGAAGCCCTCATCAGGGTTTGAACTTGCTAGCCAAGGAGGAGGCTTAGAAGATGAAGAGGTTCCTGTAGTAGAAGTGCTCAATGGTTTGGAAGATATGTCGAAGCGTAACGAGCTATTGCAGGAGGCCTTCAAAATCTTCGACGAAGATGGAGATGGATACATAGATGCAATGGAGTTGAAGAGGGTTCTGGATTGCTTGGGTTTGGATAAAGGTTGGGACATGAGTACCATTGAGAAAATGGTGAATGTTGTAGATTTGAACTTTGATGGCAAGGTTGATTTCAGTGAGTTTGAGTTGATCATGGGGTAG 567 0.4392 MRITEACSRIIGDFLQGFRRSQESSKPQVDHSDHPCKPQNVLRLDDKMVSALITVFGMQNNGRIKKENARQVVEKLGLLYNGSEEEKPSSGFELASQGGGLEDEEVPVVEVLNGLEDMSKRNELLQEAFKIFDEDGDGYIDAMELKRVLDCLGLDKGWDMSTIEKMVNVVDLNFDGKVDFSEFELIMG 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0550 188 CDD EFh 125 183 IPR002048 GO:0005509
Lele01g0550 188 SUPERFAMILY EF-hand 43 187 IPR011992 -
Lele01g0550 188 Pfam EF-hand domain pair 124 187 IPR002048 GO:0005509
Lele01g0550 188 ProSiteProfiles EF-hand calcium-binding domain profile. 120 155 IPR002048 GO:0005509
Lele01g0550 188 ProSiteProfiles EF-hand calcium-binding domain profile. 158 188 IPR002048 GO:0005509
Lele01g0550 188 Gene3D - 20 187 - -
Lele01g0550 188 PANTHER CALCIUM BINDING PROTEIN 119 186 - -
Lele01g0550 188 FunFam Calmodulin A 44 188 - -
Lele01g0550 188 SMART efh_1 124 152 IPR002048 GO:0005509
Lele01g0550 188 SMART efh_1 162 188 IPR002048 GO:0005509
Lele01g0550 188 ProSitePatterns EF-hand calcium-binding domain. 133 145 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0550 Lele-ChrLele01 3274666 3275232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0550 40 187 EF-hand Containing Proteins AT5G44460 34.615 3.73e-17 73.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0550 01 3274666 3275232 Lele03g0555 03 3296496 3297062 hybridization
Lele01g0550 01 3274666 3275232 Lele04g0563 04 3423468 3424115 hybridization