Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0555 ATGGGGGTAACCGAAGCATGCTCCAGGATCATTGGAGACCTTTTACAAGGTTTCAGACGTTCGCAAGAAAGCTCAAAGCCTAAAGTTGATCGCAGTGATCCTCCCTGCAAGCCCCAGAATGTGCTCAAACTTGATGACAAGATGGTCAGTGCTCTCATCACTGTCTTTGGCATGCAAAACAATGGAAGAATCAAGAAGGAAAACGCAAGGCAAGTGGTAGAGAAGCTCGGTTTGCTATACAATGGTTCAGAGGAAGAGAAGCCCTCATCAGGGTTTGAACTTGCTACCCAAGGAGGAGGCTTAGAAGATGAAGAGGTTCCTGTAGAAGAAGTACTCAATGGATTGGAAGATATGTCGAAGCGTAACGAGCTATTGCAGGAGGCCTTCAAAATATTCGACGAAGGTGGAGATGGATACATAGATGCAATGGAGTTGAAGAGGGTTCTAGATTGCTTGGGTTTGGATAAAGGTTGGGACATGAGTACCATTGAGAAAATGGTGAATGTTGTAGATTTGAACTTTGATGGCAAGGTTGATTTCGGTGAGTTTGAGTTGATGATGGGGTAG 567 0.448 MGVTEACSRIIGDLLQGFRRSQESSKPKVDRSDPPCKPQNVLKLDDKMVSALITVFGMQNNGRIKKENARQVVEKLGLLYNGSEEEKPSSGFELATQGGGLEDEEVPVEEVLNGLEDMSKRNELLQEAFKIFDEGGDGYIDAMELKRVLDCLGLDKGWDMSTIEKMVNVVDLNFDGKVDFGEFELMMG 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0555 188 CDD EFh 125 183 IPR002048 GO:0005509
Lele03g0555 188 FunFam Calmodulin A 43 188 - -
Lele03g0555 188 SUPERFAMILY EF-hand 39 187 IPR011992 -
Lele03g0555 188 Coils Coil 108 128 - -
Lele03g0555 188 Pfam EF-hand domain pair 124 187 IPR002048 GO:0005509
Lele03g0555 188 ProSiteProfiles EF-hand calcium-binding domain profile. 120 155 IPR002048 GO:0005509
Lele03g0555 188 SMART efh_1 162 188 IPR002048 GO:0005509
Lele03g0555 188 SMART efh_1 124 152 IPR002048 GO:0005509
Lele03g0555 188 ProSiteProfiles EF-hand calcium-binding domain profile. 158 188 IPR002048 GO:0005509
Lele03g0555 188 Gene3D - 21 188 - -
Lele03g0555 188 PANTHER CALCIUM BINDING PROTEIN 119 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0555 Lele-ChrLele03 3296496 3297062 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0555 52 187 EF-hand Containing Proteins AT5G44460 34.722 8.01e-17 72.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0550 01 3274666 3275232 Lele03g0555 03 3296496 3297062 hybridization
Lele02g0545 02 3288151 3288798 Lele03g0555 03 3296496 3297062 hybridization