Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0563 ATGAAAATAATCACCATACTTGTAATTCAACTCTTGGCTTTCATTCCTTCTTTGTTGAATTCTGTTCTTGGAGCATTGCCACAAATGGGGATAACAGAAGCATGCTCGAGGATCATTGGTGACATTCTACAAGGTTTCAGACGTTCACAAGAAAGCTCAAAGCCTCAAGTTGATCACAACAATCCTCCCTACATGCCCCAGAATGTGCTCAAACTTGATGACAAGATGGTCAGTGCTCTCATCACTGTCTTTGGCATGCAAAACAATGGAAGAATCAAGAAGGAAAACGCAAGGCAAGTGGTAGAGAAGCTCGGTTTGCTATATGGTTCAGAGGAAGAGAAGCCCTCATCAGGGTTTGAACTTGCTAGCCAAGGAGGAGGCTTAGAAGATGAAGAGGTTCCTGTAGAAGAAGTGCTCAATGGATTGGAAGATATGTCGAAGCGTAACGAGCTATTACAGGAGGCCTTCAAAATCTTCGACGAAGATGGAGATGGATACATAGATGCAATGGAGTTGAAGAGGGTTCTGGATTGCTTGGGTTTGGATAAAGGTTGGGACATGAGCACCATTGAGAACATGGTGAATGTTGTAGATTTGAACTTTGATGGTAAGGTTGATTTCAGTGAGTTTGAGTTGATGATGGGGTAG 648 0.429 MKIITILVIQLLAFIPSLLNSVLGALPQMGITEACSRIIGDILQGFRRSQESSKPQVDHNNPPYMPQNVLKLDDKMVSALITVFGMQNNGRIKKENARQVVEKLGLLYGSEEEKPSSGFELASQGGGLEDEEVPVEEVLNGLEDMSKRNELLQEAFKIFDEDGDGYIDAMELKRVLDCLGLDKGWDMSTIENMVNVVDLNFDGKVDFSEFELMMG 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0563 215 SMART efh_1 189 215 IPR002048 GO:0005509
Lele04g0563 215 SMART efh_1 151 179 IPR002048 GO:0005509
Lele04g0563 215 Coils Coil 135 155 - -
Lele04g0563 215 ProSiteProfiles EF-hand calcium-binding domain profile. 185 215 IPR002048 GO:0005509
Lele04g0563 215 ProSiteProfiles EF-hand calcium-binding domain profile. 147 182 IPR002048 GO:0005509
Lele04g0563 215 PANTHER CALCIUM BINDING PROTEIN 146 214 - -
Lele04g0563 215 ProSitePatterns EF-hand calcium-binding domain. 160 172 IPR018247 -
Lele04g0563 215 FunFam Calmodulin A 77 215 - -
Lele04g0563 215 SUPERFAMILY EF-hand 82 214 IPR011992 -
Lele04g0563 215 CDD EFh 152 210 IPR002048 GO:0005509
Lele04g0563 215 Pfam EF-hand domain pair 151 214 IPR002048 GO:0005509
Lele04g0563 215 Gene3D - 49 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0563 Lele-ChrLele04 3423468 3424115 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0563 126 214 EF-hand Containing Proteins AT4G20780 47.191 2.20e-16 72.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0550 01 3274666 3275232 Lele04g0563 04 3423468 3424115 hybridization
Lele02g0545 02 3288151 3288798 Lele04g0563 04 3423468 3424115 hybridization