Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0239 ATGGATCCCGATGAGGAGGAGTATGAGGAATACGAAGATGACCAACCGGCCGATGACGACGAAGCGGAAGTGCAGGAGGAGGAGGAGGAGGAGGCCGATAGAGGAGCCTCCTTCAGGAAGCGGAGAAGATCTGGGTTCATAGACGACGACGCTGAGGAGGTCGACGAGGACGAAGAGGTGGAGGAGGATGATGAGGACGATTTTGATGAAAGAGGCGGTCGAAAGCGTCAATACAAGAGAATGGCTGCTTCCAATTTCTTCGATGAAGAGGCGCAGGTGGACAGCGATGAGGAAGAGGAAGAGGAAGAAGGCGAGGACGATTTCATCGTGGAAGAAGGAACTGATCTACCAGATGAAGATGGTGGAAGGAGGATGCATAGCCGTCGTATGCTGCCCCATGATCAAGAAGACCATGAAGACCTTGAAGCCATGGCAAGGAGCATTCAAGAGAGATATGGAAGGCGAGCTACAGATTACGACGAAGAAGCTACAGATGTAGAGCAGCAAGCACTTCTGCCATCCGTGAGAGATCCAAAATTGTGGATGGTTAAATGTGCGATTGGTCGTGAGCGTGAGGCTGCTGTTTGCCTCATGCAAAAATATATTGATAAAGGGTCTGAACTGCAAATAAGGTCTGCCGTTGCTCTTGACCATCTAAAAAATTTTATATATATTGAAGCTGATAAAGAAGCCCATGTGCGAGAGGCATGTAAAGGTCTACGCAACATATTTGCCCAGAAGATAACACTTGTTCCAATCAGAGAGATGACTGATGTTCTTTCCGTTGAAAGCAAAGTTATTGATCTTTCTAGAGATACATGGGTCAGAATGAAGATTGGGACATACAAGGGGGACCTTGCAAAAGTTGTGGATGTTGATAATGTACGGCAGAGGGTTACTGTGAAATTGATTCCGAGGATAGACTTACAAGCCCTTGCAAATAAATTGGAAGGTAGAGAAGTTGTGAAAAAGAAAGCATTTGTTCCTCCTCCTCGGTTTATGAATGTTGATGAAGCTAGGGAACTACACATCCGTGTAGAGCATAGACGTGATCCCATGACTGGGGAACGCTTTGAAACCATTGGAGGCATGATGTTCAAAGATGGTTTCTTGTACAAAACAGTATCAATAAAGTCAATCAGCGCTCAAAATATCAAACCTACGTTTGATGAACTTGAAAAATTTCGAAAACTGGGTGAGAACGGAGATGGAGATATAGCGAGTCTGTCAACATTATTTGCTAACAGAAAGAAAGGGCATTTTACGAAAGGTGATGCTGTTATTGTCATCAAGGGGGATCTAAAGAATTTGAAAGGGTGGGTAGAGAAAGTTGATGAGGATAATGTTCATATAAGGCCAGAAATCAAGGGCCTTCCAAAAACTCTTGCTGTAAATGAAAGGGAACTTTGTAAATACTTTGAACCTGGTAACCATGTTAAAGTTGTTTCTGGCACACAAGAAGGGGCTACTGGTATGGTGGTGAAGGTGGAGCAGCATGTGCTGATTATTTTATCTGATACAACAAAAGAACATATCCGAGTATTTGCTGATGACGTTGTGGAGAGTTCTGAAGTGACCATGGGAGTTACAAGAATTGGAGACTATGAGCTCCATGATCTTGTCCTGCTAGATAATTTGAGCTTTGGTGTGATAATACGTGTAGAAAGTGAGGCCTTTCAGGTTCTTAAGGGAGTTCCTGACAGACCTGAAGTTGCCCTGGTGAAATTAAGGGAAATCAAATGCAAGATTGATAAAAAAATAAGTGTGCAAGACAGGTTTAAGAATACAGTATCAACAAAGGATGTTGTACGGATAGTTGAGGGTCCTTGCAAAGGCAAACAAGGACCAGTGGAGCACATATATAGAGGAGTATTGTTCATCTACGATCGACATCATCTTGAACATGCAGGCTTCATATGTTCAAAAGCCCAATCATGTGTGGTTGTGGGAGGTTCACGGTCCAATGGCGACAGAAATGGTGATGCCTACTCAAGATTTCCCAGCCTTAGAACCCCACCTCGAATCCCACAATCTCCTAAGAGGTTTTCTGGAGGAGGGCCACCAAATTCTGGAGGAAGGCATAGAGGTGGAAGAGGGCATGATGGATTGACTGGTGCAACAGTTAAAATTCGCCAAGGTCCCTATAAAGGTTATCGTGGGCGTGTTATAGAAGTTAATGGCACGTCAGTTCGGGTTGAACTGGAGTCCCAAATGAAAGTTGTGACAGTGGATCGTAATCATATTTCTGATAATGTGGTGGTAACCCCGCATTGTGACTCGTCGCGGTATGGAATGGGAAGTGAGACCCCAATGCACCCTTCTCGAACTCCTTTACATCCTTATATGACTCCTATGAGAGATCCTGGAGCCACACCTATTCACGATGGGATGAGAACTCCCATGCGTGATCGCGCATGGAATCCTTACACTCCCATGAGTCCTCCAAGGGATAACTGGGAAGATGGAAATCCAGGCTCTTGGGGTACCAGTCCACAATACCAGCCAGGGAGTCCTCCTTCACGAATTTATGAAGCTCCAACTCCTGGTGCTGGTTGGGCTAGTACTCCTGGTGGCAATTACAGCGAAGCTGGGACACCTAGGGATAATTCTGCATATGCCAATGCTCCAAGCCCATATTTGCCATCAACACCAGGTGGACAGCCTATGACACCGAACTCAGCATCTTATCTTCCTGGCACCCCTGGAGGGCAGCCTATGACTCCAGGAACTGGTGGCCTGGACATGATGTCCCCGGTCATAGACAGTGAAGGACCATGGTTTATGCCAGATATGTTAGTCAATGTACGTCGTGCTGAAGAGGACTCTATTGTGGGAATTATAAGAGAGGTTCTTCCGGATGGATCTTGCAGGGTGGCCCTGGGATCAAGTGGAAATGGTGATACAATAACAGCTCTTCCCAGTGAAATGGACTCGGTAGTACCAAGGAAATCAGACAAGATAAAGATTATGGGTGGGGCTTTGCGTGGTGCTACAGGCAAGTTGATTGGGGTAGATGGCACTGATGGTATTGTAAAGGTAGATGATACACTGGATGTGAAAATTTTAGACTTAGTCATTCTAGCTAAATTAGCTCAATAG 3099 0.4537 MDPDEEEYEEYEDDQPADDDEAEVQEEEEEEADRGASFRKRRRSGFIDDDAEEVDEDEEVEEDDEDDFDERGGRKRQYKRMAASNFFDEEAQVDSDEEEEEEEGEDDFIVEEGTDLPDEDGGRRMHSRRMLPHDQEDHEDLEAMARSIQERYGRRATDYDEEATDVEQQALLPSVRDPKLWMVKCAIGREREAAVCLMQKYIDKGSELQIRSAVALDHLKNFIYIEADKEAHVREACKGLRNIFAQKITLVPIREMTDVLSVESKVIDLSRDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVVKKKAFVPPPRFMNVDEARELHIRVEHRRDPMTGERFETIGGMMFKDGFLYKTVSIKSISAQNIKPTFDELEKFRKLGENGDGDIASLSTLFANRKKGHFTKGDAVIVIKGDLKNLKGWVEKVDEDNVHIRPEIKGLPKTLAVNERELCKYFEPGNHVKVVSGTQEGATGMVVKVEQHVLIILSDTTKEHIRVFADDVVESSEVTMGVTRIGDYELHDLVLLDNLSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKIDKKISVQDRFKNTVSTKDVVRIVEGPCKGKQGPVEHIYRGVLFIYDRHHLEHAGFICSKAQSCVVVGGSRSNGDRNGDAYSRFPSLRTPPRIPQSPKRFSGGGPPNSGGRHRGGRGHDGLTGATVKIRQGPYKGYRGRVIEVNGTSVRVELESQMKVVTVDRNHISDNVVVTPHCDSSRYGMGSETPMHPSRTPLHPYMTPMRDPGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRIYEAPTPGAGWASTPGGNYSEAGTPRDNSAYANAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGTGGLDMMSPVIDSEGPWFMPDMLVNVRRAEEDSIVGIIREVLPDGSCRVALGSSGNGDTITALPSEMDSVVPRKSDKIKIMGGALRGATGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLAQ 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0239 1032 SUPERFAMILY Translation proteins SH3-like domain 413 451 IPR008991 -
Lele01g0239 1032 Pfam KOW motif 705 735 IPR005824 -
Lele01g0239 1032 Pfam KOW motif 475 502 IPR005824 -
Lele01g0239 1032 MobiDBLite consensus disorder prediction 654 706 - -
Lele01g0239 1032 MobiDBLite consensus disorder prediction 1 124 - -
Lele01g0239 1032 CDD KOW_Spt5_6 974 1031 IPR041980 -
Lele01g0239 1032 FunFam Transcription elongation factor SPT5 268 310 - -
Lele01g0239 1032 Gene3D - 159 261 IPR036735 GO:0006355
Lele01g0239 1032 SMART nusgn_4 177 263 IPR006645 GO:0140673
Lele01g0239 1032 CDD KOW_Spt5_1 272 309 IPR041973 -
Lele01g0239 1032 Gene3D - 684 751 IPR014722 -
Lele01g0239 1032 PANTHER SUPPRESSOR OF TY 5 68 1010 IPR039659 GO:0006357|GO:0032784
Lele01g0239 1032 MobiDBLite consensus disorder prediction 823 837 - -
Lele01g0239 1032 FunFam Transcription elongation factor SPT5 475 524 - -
Lele01g0239 1032 SUPERFAMILY Translation proteins SH3-like domain 464 523 IPR008991 -
Lele01g0239 1032 MobiDBLite consensus disorder prediction 858 877 - -
Lele01g0239 1032 CDD KOW_Spt5_2 421 471 IPR041975 -
Lele01g0239 1032 CDD KOW_Spt5_5 703 749 IPR041978 -
Lele01g0239 1032 ProSitePatterns Ribosomal protein L24 signature. 424 441 IPR005825 GO:0003735|GO:0005840|GO:0006412
Lele01g0239 1032 Gene3D - 415 472 IPR014722 -
Lele01g0239 1032 SMART kow_9 596 623 IPR005824 -
Lele01g0239 1032 SMART kow_9 420 447 IPR005824 -
Lele01g0239 1032 SMART kow_9 268 295 IPR005824 -
Lele01g0239 1032 SMART kow_9 980 1007 IPR005824 -
Lele01g0239 1032 SMART kow_9 701 728 IPR005824 -
Lele01g0239 1032 SMART kow_9 472 499 IPR005824 -
Lele01g0239 1032 FunFam Transcription elongation factor SPT5 159 261 - -
Lele01g0239 1032 MobiDBLite consensus disorder prediction 796 913 - -
Lele01g0239 1032 FunFam Transcription elongation factor SPT5 415 472 - -
Lele01g0239 1032 FunFam Transcription elongation factor SPT5 688 751 - -
Lele01g0239 1032 MobiDBLite consensus disorder prediction 90 115 - -
Lele01g0239 1032 MobiDBLite consensus disorder prediction 69 83 - -
Lele01g0239 1032 Pfam Early transcription elongation factor of RNA pol II, NGN section 179 260 IPR005100 -
Lele01g0239 1032 Gene3D - 267 310 IPR014722 -
Lele01g0239 1032 CDD KOW_Spt5_4 600 642 IPR041977 -
Lele01g0239 1032 Pfam Spt5 transcription elongation factor, acidic N-terminal 86 173 IPR022581 -
Lele01g0239 1032 MobiDBLite consensus disorder prediction 886 900 - -
Lele01g0239 1032 MobiDBLite consensus disorder prediction 50 68 - -
Lele01g0239 1032 CDD KOW_Spt5_3 472 522 IPR041976 -
Lele01g0239 1032 PIRSF Spt5 1 1032 IPR017071 GO:0006357|GO:0032784
Lele01g0239 1032 CDD NGN_Euk 179 261 IPR039385 -
Lele01g0239 1032 MobiDBLite consensus disorder prediction 1 31 - -
Lele01g0239 1032 MobiDBLite consensus disorder prediction 32 49 - -
Lele01g0239 1032 Gene3D - 475 524 IPR014722 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0239 Lele-ChrLele01 1363073 1369688 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0239 01 1363073 1369688 Lele01g0239 01 1363073 1369688 ECH
Lele01g0239 01 1363073 1369688 Lele03g0245 03 1342580 1349010 hybridization
Lele01g0239 01 1363073 1369688 Lele04g0239 04 1415001 1421414 hybridization