Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0239 ATGCGTCATCGAGGCATGGATCCCGACGAGGAGTATGAGGAGGAATACGAAGATGACCAAGCGGTCGATGACGATGAAGCGGAAGTGGAGGAGGAGGAGGCCGGCAGAGGAGCCTCCTCCAGGAAGCGGAGAAGATCTGGGTTCATAGACGACGACGCTGAGGAGGTCGACGAGGACGAAGAGGATGATGATGATGATGATGATTTTGATGAAAGAGGCGGTCGAAAGCGTCAATACAAGAGAATGGCTGCTTCCAATTTCTTCGATGAAGAGGCGCAGGTAGACAGCGATGAGGAAGAGGAAGAGGAAGAAGGAGAGGACGATTTCATTGTCGAAGAAGGAACTGATATACCAGATGAAGATGGTGGAAGGAGGATGCATAGCCGTCGTATGCTGCCCCATGATCAAGAAGACCATGAAGACCTTGAAGCTATGGCGAGGAGCATTCAAGAAAGATATGGAAGGCGTGCTACAGATTACGATGAAGAAGCTACAGATGTAGAGCAGCAAGCACTTCTGCCATCTGTGAGAGATCCAAAATTGTGGATGGTTAAATGTGCGATTGGTCGTGAGCGTGAGGCGGCTGTCTGCCTCATGCAAAAATATATCGATAAAGGGTCTGAACTGCAAATTAGGTCTGCTGTTGCTCTTGACCATCTCAAAAATTTTATATATATAGAAGCTGATAAAGAGGCCCATGTGCGAGAGGCATGTAAAGGTCTACGCAACATATTTGCCCAGAAGATAACACTTGTTCCAATCAGAGAGATGACTGATGTTCTTTCTGTTGAAAGCAAAGCTATTGATCTTTCTAGAGATACATGGGTCAGAATGAAGATTGGGACATACAAGGGGGACCTTGCAAAAGTTGTGGATGTTGATAATGTACGGCAGAGGGTTACTGTGAAATTGATTCCGAGGATAGACTTACAAGCCCTTGCAAATAAATTGGAAGGTAGAGAAGTTGTGAAAAAGAAAGCATTTGTTCCTCCTCCTCGGTTTATGAATGTTGATGAAGCTAGGGAACTACACATCCGTGTAGAGCATAGACGTGATCCCATGACTGGGGAACGCTTTGAAACCATTGGAGGCATGATGTTCAAAGATGGTTTCTTGTACAAAACAGTATCAATCAAGTCAATCAGCGCTCAAAATATCAAACCTACGTTTGATGAACTTGAAAAATTTCGAAAACCGGGTGAGAATGGAGATGGAGATGTAGCTAGTCTGTCAACATTATTTGCAAACAGAAAGAAAGGGCATTTTATGAAAGGTGATGCTGTTATTGTCATCAAGGGGGATCTAAAGAATTTGAAGGGGTGGGTAGAGAAAGTTGATGAGGATAATGTTCATATAAGGCCAGAAATCAAGGGCCTTCCGAAAACTCTTGCTGTAAATGAAAGGGAACTTTGTAAATACTTTGAACCTGGGAACCATGTTAAAGTTGTTTCTGGCACACAAGAAGGGGCTACTGGTATGGTGGTGAAGGTGGAGCAGCATGTGCTGATTATTTTATCTGATACAACAAAAGAACATCTCCGTGTATTTGCTGATGACGTTGTGGAGAGTTCTGAAGTGACAACGGGAGTTACAAGAATTGGGGACTATGAGCTCCATGATCTTGTCCTGCTAGATAATTTGAGCTTTGGTGTGATAATACGTGTAGAAAGTGAGGCCTTTCAGGTTCTTAAGGGAGTACCTGACAGACCTGAAGTTGCACTGGTGAAATTAAGGGAAATCAAGTGCAAGATTGATAAAAAAATAAGTGTGCAGGACAGGTTTAAGAATACAGTATCAACAAAGGATGTTGTACGGATAGTTGAGGGTCCTTGCAAAGGCAAACAAGGACCAGTGGAGCACATATATAGAGGAGTCTTGTTTATCTATGATCGACATCATCTTGAACATGCAGGCTTCATATGTTCAAAAGCTCAATCATGTGTAGTTGTGGGAGGTTCACGGTCCAATGGCGATAGAAATGGTGATGCCTACTCAAGATTTCCCAGTCTTAGAACTCCACCTCGAATCCCACAATCTCCTAGGAGGTTTTCTCGAGGAGGGCCACCAAATTCTGGAGGAAGGCATAGAGGTGGAAGAGGGCATGATGGATTGACTGGTGCAACAGTTAAAATTCGCCAAGGTCCCTATAAAGGTTGCCGCGGGCGTGTCATAGAAGTTAATGGCACATCGGTTCGGGTTGAACTGGAGTCCCAGATGAAAGATGTGACAGTGGATCGTAATCATATTTCTGATAATGTGACTGTAACTCCACATCGGGACTCATCGCGGTATGGAATGGGAAGTGAGACCCCAATGCACCCTTCTCGAACTCCTTTACATCCTTATATGACTCCTATGAGAGATCCTGGAGCCACACCTATTCACGATGGGATGAGAACTCCCATGCGTGATCGGGCATGGAATCCTTACACTCCCATGAGTCCTCCCAGGGATAACTGGGAAGATGGAAATCCAGGCTCTTGGGGAACCAGTCCACAATACCAGCCAGGGAGTCCTCCTTCACGAATGTATGAAGCTCCAACTCCTGGTGCTGGTTGGGCTAGTACTCCTGGTGGCAATTACAGCGAAGCTGGGACACCTAGGGATAATTCTGCATATGCCAATGCTCCAAGCCCATATTTACCATCGACACCAGGTGGACAGCCTATGACACCAAACACAGCATCTTATCTTCCTGGCACCCCTGGAGGGCAGCCTATGACTCCAGGAACTGGTGGACTGGACATGATGTCCCCGGTTATAGGCGCAGACAGTGAAGGACCATGGTTTATGCCAGATATATTAGTCAATGTACGTCGTGCTGGAGAGGAATCTATTGTGGGAATTATAAGAGAGGTTCTTCCGGATGGATCTTGCAGGGTGGCCCTGGGATCAAGTGGAAATGGTGAAACAATAACAGCTCTTCCCAGTGAAATGGAGGCTGTAGTACCGAGAAAATCGGACAAGATAAAGATTATGGGTGGGGCTTTGCGTGGTGCTACAGGCAAGTTGATTGGGGTAGATGGCACTGATGGTATCGTAAAGGTAGATGATACCCTGGATGTGAAGATTTTAGATTTAGTCATTCTAGCTAAATTAGCTCAATCGTGA 3111 0.4545 MRHRGMDPDEEYEEEYEDDQAVDDDEAEVEEEEAGRGASSRKRRRSGFIDDDAEEVDEDEEDDDDDDDFDERGGRKRQYKRMAASNFFDEEAQVDSDEEEEEEEGEDDFIVEEGTDIPDEDGGRRMHSRRMLPHDQEDHEDLEAMARSIQERYGRRATDYDEEATDVEQQALLPSVRDPKLWMVKCAIGREREAAVCLMQKYIDKGSELQIRSAVALDHLKNFIYIEADKEAHVREACKGLRNIFAQKITLVPIREMTDVLSVESKAIDLSRDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVVKKKAFVPPPRFMNVDEARELHIRVEHRRDPMTGERFETIGGMMFKDGFLYKTVSIKSISAQNIKPTFDELEKFRKPGENGDGDVASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEDNVHIRPEIKGLPKTLAVNERELCKYFEPGNHVKVVSGTQEGATGMVVKVEQHVLIILSDTTKEHLRVFADDVVESSEVTTGVTRIGDYELHDLVLLDNLSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKIDKKISVQDRFKNTVSTKDVVRIVEGPCKGKQGPVEHIYRGVLFIYDRHHLEHAGFICSKAQSCVVVGGSRSNGDRNGDAYSRFPSLRTPPRIPQSPRRFSRGGPPNSGGRHRGGRGHDGLTGATVKIRQGPYKGCRGRVIEVNGTSVRVELESQMKDVTVDRNHISDNVTVTPHRDSSRYGMGSETPMHPSRTPLHPYMTPMRDPGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRMYEAPTPGAGWASTPGGNYSEAGTPRDNSAYANAPSPYLPSTPGGQPMTPNTASYLPGTPGGQPMTPGTGGLDMMSPVIGADSEGPWFMPDILVNVRRAGEESIVGIIREVLPDGSCRVALGSSGNGETITALPSEMEAVVPRKSDKIKIMGGALRGATGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLAQS 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0239 1036 Pfam KOW motif 476 517 IPR005824 -
Lele04g0239 1036 MobiDBLite consensus disorder prediction 91 116 - -
Lele04g0239 1036 Pfam Early transcription elongation factor of RNA pol II, NGN section 180 261 IPR005100 -
Lele04g0239 1036 MobiDBLite consensus disorder prediction 752 780 - -
Lele04g0239 1036 CDD KOW_Spt5_4 601 643 IPR041977 -
Lele04g0239 1036 MobiDBLite consensus disorder prediction 824 838 - -
Lele04g0239 1036 PANTHER SUPPRESSOR OF TY 5 69 1013 IPR039659 GO:0006357|GO:0032784
Lele04g0239 1036 FunFam Transcription elongation factor SPT5 416 473 - -
Lele04g0239 1036 MobiDBLite consensus disorder prediction 10 32 - -
Lele04g0239 1036 FunFam Transcription elongation factor SPT5 269 311 - -
Lele04g0239 1036 CDD KOW_Spt5_3 473 523 IPR041976 -
Lele04g0239 1036 MobiDBLite consensus disorder prediction 33 51 - -
Lele04g0239 1036 CDD NGN_Euk 180 262 IPR039385 -
Lele04g0239 1036 MobiDBLite consensus disorder prediction 117 137 - -
Lele04g0239 1036 MobiDBLite consensus disorder prediction 70 84 - -
Lele04g0239 1036 FunFam Transcription elongation factor SPT5 476 525 - -
Lele04g0239 1036 SUPERFAMILY Translation proteins SH3-like domain 414 452 IPR008991 -
Lele04g0239 1036 MobiDBLite consensus disorder prediction 1 137 - -
Lele04g0239 1036 MobiDBLite consensus disorder prediction 52 69 - -
Lele04g0239 1036 SMART nusgn_4 178 264 IPR006645 GO:0140673
Lele04g0239 1036 CDD KOW_Spt5_5 704 750 IPR041978 -
Lele04g0239 1036 MobiDBLite consensus disorder prediction 798 897 - -
Lele04g0239 1036 Gene3D - 269 311 IPR014722 -
Lele04g0239 1036 PIRSF Spt5 3 1036 IPR017071 GO:0006357|GO:0032784
Lele04g0239 1036 Gene3D - 160 262 IPR036735 GO:0006355
Lele04g0239 1036 MobiDBLite consensus disorder prediction 859 878 - -
Lele04g0239 1036 Pfam Spt5 transcription elongation factor, acidic N-terminal 87 174 IPR022581 -
Lele04g0239 1036 CDD KOW_Spt5_2 422 472 IPR041975 -
Lele04g0239 1036 CDD KOW_Spt5_6 977 1034 IPR041980 -
Lele04g0239 1036 FunFam Transcription elongation factor SPT5 689 752 - -
Lele04g0239 1036 FunFam Transcription elongation factor SPT5 160 262 - -
Lele04g0239 1036 Gene3D - 686 752 IPR014722 -
Lele04g0239 1036 CDD KOW_Spt5_1 273 310 IPR041973 -
Lele04g0239 1036 SMART kow_9 702 729 IPR005824 -
Lele04g0239 1036 SMART kow_9 269 296 IPR005824 -
Lele04g0239 1036 SMART kow_9 597 624 IPR005824 -
Lele04g0239 1036 SMART kow_9 983 1010 IPR005824 -
Lele04g0239 1036 SMART kow_9 421 448 IPR005824 -
Lele04g0239 1036 SMART kow_9 473 500 IPR005824 -
Lele04g0239 1036 SUPERFAMILY Translation proteins SH3-like domain 465 524 IPR008991 -
Lele04g0239 1036 MobiDBLite consensus disorder prediction 655 706 - -
Lele04g0239 1036 Gene3D - 476 525 IPR014722 -
Lele04g0239 1036 Gene3D - 416 473 IPR014722 -
Lele04g0239 1036 ProSitePatterns Ribosomal protein L24 signature. 425 442 IPR005825 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0239 Lele-ChrLele04 1415001 1421414 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0239 04 1415001 1421414 Lele04g0239 04 1415001 1421414 ECH
Lele01g0239 01 1363073 1369688 Lele04g0239 04 1415001 1421414 hybridization
Lele02g0233 02 1306929 1313357 Lele04g0239 04 1415001 1421414 hybridization