Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0245 ATGGATCCCGATGAGGAGGAGTATGAGGAATACGAAGATGACCAGTTCGATGACGACGAAGCGGAACTGGAGGAGGAGGAGGCCGATAGAGGAGCCTCCTTCAGGAAGCGGAGAAGATCTGGGTTCATAGACGACGACGCTGAGGAGGTGGACGAGGACGAAGAGGTGGACGAGGATGATTTTGATGAAAGAGGCGGTCGAAAGCGTCAATACAAGAGAATGGCTGCTTCCAATTTCTTCGATGAAGAGGCGCAGGTGGACAGCGATGAGGAAGAGGAAGAGGAAGAAGGCGAGGACGATTTCATCGTGGAAGAAGGAACTGATCTACCAGATGAAGATGGTGGAAGGAGGATGCATAGCCGTCGTATGCTGCCCCATGATCAAGAAGACCATGAAGACCTTGAAGCTATGGCAAGGAGCATTCAAGAGAGATATGGAAGGCGAGCTACAGATTACGAAGAAGAAGCTACAGATGTAGAGCAGCAAGCACTTCTGCCATCCGTGAGAGATCCAAAATTGTGGATGGTTAAATGTGCGATTGGTCGTGAGCGTGAGGCTGCTGTTTGCCTCATGCAAAAATATATTGATAAAGGGTCTGAACTGCAAATAAGGTCTGCTGTTGCTCTTGACCATCTCAAAAATTTTATATATATTGAAGCTGATAAAGAAGCCCATGTGCGAGAGGCATGTAAAGGTCTACGCAACATATTTGCCCAGAAGATAACACTTGTTCCAATCATAGAGATGACTGATGTTCTTTCCGTTGAAAGCAAAGCTATTGATCTTTCTAGAGATACATGGGTCAGAATGAAGATTGGGACATACAAGGGGGACCTTGCAAAAGAAGGTAGAGAAGTTGTGAAAAAGAAAGCATTTGTTCCTCCTCCTCGGTTTATGAATGTCGATGAAGCTAGGGAACTACACATCCGTGTAGAGCATAGACGTGATCCCATGACTGGGGAACGCTTTGAAACCATTGGAGGCATGATGTTCAAAGATGGTTTCTTGTACAAAACAGTATCAATAAAGTCAATCAGCGCTCAAAATATCAAACCTACGTTTGATGAACTTGAAAAATTTCGAAAACTGGGTGAGAACGGAGATGGAGATGTAGCTAGCCTGTCAACATTATTCGCAAACAGAAAGAAAGGGCATTTTATGAAAGGTGATGCTGTTATTGTCATCAAGGGGGATCTAAAGAATTTGAAGGGGGAACTTTGTAAATACTTTGAACCTGGTAACCATGTTAAAGTTGTTTCTGGAACACAAGAAGGGGCTACTGGTATGGTGGTGAAGATCCGTGTATTTGCTGATGACGTTGTGGAGAGTTCTGAAGTGACCATGGGAGTTACAAGAATTGGGGACTATGAGCTCCATGATCTTGTCCTGCTAGATAATTTGAGCTTTGGTGTGATAATACGTGTAGAAAGTGAGGCCTTTCAGGTTCTTAAGGGAGTTCCTGACAGACCTGAAGTTGCACTGGTGAAATTAAGGGAAATCAAGTGCAAGATTGATAAAAAAATAAGTGTGCAAGACAGGTTTAAGAATACAGTATCAACAAAGGATGTTGTACGGATAGTTGAGGGTCCTTGCAAAGGCAAACAAGGACCAGTGGAGCACATATATAGAGGAGTCTTGTTCATCTTCGATCGACATCATCTTGAACATGCAGGCTTCATATGTTCAAAAGCTCAATCATGTGTGGTTGTGGGAGCTGGAGGAAGGCATAGAGGTGGAAGAGGGCATGATGGATTGACTGGTGCAACAGTTAAAATTCGCCAAGTGGATCGTAATCATATTTCTGATAATGTGGTGGTAACCCCGCGTCGTCAACTATCTTATTCTGTATGTTATGCCAGTGACTCGTTGCGGTATGGAATGGGAAGTGAGACCCCAATGCACCCTTCTCGAACTCCTTTACATCCTTATATGACTCCTATGAGAGATCCTGGAGCCACACCTATTCACGATGGGATGAGAACTCCCATGCGTGATCGCGCATGGAATCCTTACACTCCCATGAGTCCTCCAAGGGATAACTGGGAAGATGGAAATCCAGGCTCTTGGGGTACCAGTCCACAATACCAGCCAGGGAGTCCTCCTTCACGAATGTATGAAGCTCCAACTCCTGGTGCTGGTTGGGCTAGTACTCCTGGTGGCAATGACAGCGAAGCTGGGACACCTAGGGATAATTCTGCATATGGTAGCACCGTCTTCATTATTATTGTCTTTGCATCTTTCATTTTCATGCTTGTATTCATTCGGGTTGATGTGGATGATTCTTGCAGCCAATGCTCCAAGCCCATATTTGCCATCAACACCAGGTGGACAGCCTATGACACCGAACTCAGCATCCTATCTTCCTGGCACCCCTGGAGGGCAGCCTATGACTCCAGGAACTGGTGGCCTGGACATGATGTCCCCGGTCATAGGTATTCAAGTAGTCCTAAGTTTGCCATAAACATGGTTGGAGACTGGGTGTTAGTGTTCAAAGTGATATGCAACCTCCAAGTGATACATCTTTCCAAAGGTTCATTGCCCCCCTTGACAAGCTCAGACAGTGAAGGACCATGGTTTATGCCAGATATGTTAGTCAATGTGCGTCGTGCTGGAGAGGACTCTATTGTGGGAATTATAAGAGAGGTTCTTCCGGATGGATCTTGCAGGGTGGCCCTGGGATCAAGTGGAAATGGTGATACAAGAACAGCTCTTCCCAGTGAAATGGAGGCGGTAGTACCAAGGAAATCAGACAAGATAAAGATTATGGGTGGGTCTTTGCGTGGTGCTACAGGCAAGTTGATTGGGGTAGATGGCACTGATGGTATTGTAAAGGTAGATGATACACTGGATGTGAAAATTTTAGACTTAGTCATTCTAGCTAAATTAGCTCAATCGTGA 2898 0.4531 MDPDEEEYEEYEDDQFDDDEAELEEEEADRGASFRKRRRSGFIDDDAEEVDEDEEVDEDDFDERGGRKRQYKRMAASNFFDEEAQVDSDEEEEEEEGEDDFIVEEGTDLPDEDGGRRMHSRRMLPHDQEDHEDLEAMARSIQERYGRRATDYEEEATDVEQQALLPSVRDPKLWMVKCAIGREREAAVCLMQKYIDKGSELQIRSAVALDHLKNFIYIEADKEAHVREACKGLRNIFAQKITLVPIIEMTDVLSVESKAIDLSRDTWVRMKIGTYKGDLAKEGREVVKKKAFVPPPRFMNVDEARELHIRVEHRRDPMTGERFETIGGMMFKDGFLYKTVSIKSISAQNIKPTFDELEKFRKLGENGDGDVASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGELCKYFEPGNHVKVVSGTQEGATGMVVKIRVFADDVVESSEVTMGVTRIGDYELHDLVLLDNLSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKIDKKISVQDRFKNTVSTKDVVRIVEGPCKGKQGPVEHIYRGVLFIFDRHHLEHAGFICSKAQSCVVVGAGGRHRGGRGHDGLTGATVKIRQVDRNHISDNVVVTPRRQLSYSVCYASDSLRYGMGSETPMHPSRTPLHPYMTPMRDPGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRMYEAPTPGAGWASTPGGNDSEAGTPRDNSAYGSTVFIIIVFASFIFMLVFIRVDVDDSCSQCSKPIFAINTRWTAYDTELSILSSWHPWRAAYDSRNWWPGHDVPGHRYSSSPKFAINMVGDWVLVFKVICNLQVIHLSKGSLPPLTSSDSEGPWFMPDMLVNVRRAGEDSIVGIIREVLPDGSCRVALGSSGNGDTRTALPSEMEAVVPRKSDKIKIMGGSLRGATGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLAQS 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0245 965 Pfam Spt5 transcription elongation factor, acidic N-terminal 79 166 IPR022581 -
Lele03g0245 965 MobiDBLite consensus disorder prediction 1 129 - -
Lele03g0245 965 MobiDBLite consensus disorder prediction 685 699 - -
Lele03g0245 965 MobiDBLite consensus disorder prediction 83 108 - -
Lele03g0245 965 SMART nusgn_4 170 256 IPR006645 GO:0140673
Lele03g0245 965 CDD KOW_Spt5_4 521 563 IPR041977 -
Lele03g0245 965 SUPERFAMILY Translation proteins SH3-like domain 404 443 IPR008991 -
Lele03g0245 965 Gene3D - 410 462 IPR014722 -
Lele03g0245 965 SMART kow_9 517 544 IPR005824 -
Lele03g0245 965 SMART kow_9 912 939 IPR005824 -
Lele03g0245 965 SMART kow_9 409 436 IPR005824 -
Lele03g0245 965 MobiDBLite consensus disorder prediction 109 129 - -
Lele03g0245 965 MobiDBLite consensus disorder prediction 46 60 - -
Lele03g0245 965 CDD NGN_Euk 172 254 IPR039385 -
Lele03g0245 965 MobiDBLite consensus disorder prediction 61 76 - -
Lele03g0245 965 Pfam Early transcription elongation factor of RNA pol II, NGN section 172 253 IPR005100 -
Lele03g0245 965 MobiDBLite consensus disorder prediction 28 45 - -
Lele03g0245 965 MobiDBLite consensus disorder prediction 659 729 - -
Lele03g0245 965 Gene3D - 380 406 IPR014722 -
Lele03g0245 965 Coils Coil 142 162 - -
Lele03g0245 965 MobiDBLite consensus disorder prediction 1 27 - -
Lele03g0245 965 CDD KOW_Spt5_6 906 963 IPR041980 -
Lele03g0245 965 PANTHER SUPPRESSOR OF TY 5 20 573 IPR039659 GO:0006357|GO:0032784
Lele03g0245 965 FunFam Transcription elongation factor SPT5 152 254 - -
Lele03g0245 965 Gene3D - 152 254 IPR036735 GO:0006355
Lele03g0245 965 PIRSF Spt5 2 281 IPR017071 GO:0006357|GO:0032784
Lele03g0245 965 PIRSF Spt5 281 405 IPR017071 GO:0006357|GO:0032784
Lele03g0245 965 PIRSF Spt5 585 965 IPR017071 GO:0006357|GO:0032784
Lele03g0245 965 PIRSF Spt5 404 601 IPR017071 GO:0006357|GO:0032784
Lele03g0245 965 Pfam KOW motif 412 433 IPR005824 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0245 Lele-ChrLele03 1342580 1349010 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g0245 03 1342580 1349010 Lele03g0245 03 1342580 1349010 ECH
Lele01g0239 01 1363073 1369688 Lele03g0245 03 1342580 1349010 hybridization
Lele02g0233 02 1306929 1313357 Lele03g0245 03 1342580 1349010 hybridization