Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00562 ATGGGGTGTGGAAGGTTTAAGGGGTGCCTTGCTCTTGTGTTATGTGCTGCCCTGTTGGAGGGTCTAGTAAGTGGAATTGGTGTTAATTGGGGCACACAATTAACACACCCTTTGCCATCGTCCACTGTGGTGAAAATGCTGAAGGACAATGGTATTCAGAAAGTTAAGCTTTTTGATGCTGACCCTGATATTTTAAATGCTTTAAAGAAGTCTGGGATTCAGGTGATGGTTGGTATACCAAATGAGATGCTCTACTCATTGGCCAACAGTATGCAAGCGGCTGAAAAATGGGTCTCCAAGAATGTTTCAGCACATGTCTCATCTGGGGGAGTGGACATCAGGTATGTTGCAGTGGGAAATGAACCTTTCTTGTCAACTTACAATGGTTCATTTGAATCCACAACACTTCCAGCTCTTCAAAACATCCAAGCAGCTCTTGTGAAAGCTAGTTTAGGCAACCAGGTTAAAGTCACAGTTCCTCTAAATGCCGATGTGTATCAGAGTGCACAAGTACCTTCTGATGGCGACTTTAGGCAAGACATTCATGATCTCATGGTGGAGATTGTCAAGTTCTTGAGCCAGAACAATGCTCCGTTTACTGTGAACATCTATCCTTTCATCAGCCTCTATGCAGATCCCAATTTTCCTGTTGATTATGCCTTCTTCAATGGCTTTCAATCCCCCATAAATGACAATGGAAGGATCTATGACAATGTGTTTGATGCCAACCATGACACTCTGGTATGGGCGCTGCAGAAAAATGGTTTTGGAAACATGCCTATAATTGTAGGAGAAGTTGGGTGGCCTACAGATGGAGACAGAAATGCAAACCTTCAATACGCTCAACGGTTTAACCAAGGATTCATGTCGCGCTACGTCGCCGGAAAGGGGACACCAATGAGACCTGGTCCCATGGATGCATACTTGTTCAGTTTCCTAGATGAAGATTCCAAAAGCATTCAGCCAGGTAATTTTGAAAGACACTGGGGGTTGTTTTACTATGATGGACAACCCAAGTACCAGCTTAACATGGGATCAAGAACCAATGGCTTAGTAGCTGCTACTGGGATAGCATATCTGGCCAAAAAGTGGTGCATTTTGAAACCCTCAGCAAACCTCAATGATGACCAAGTAGCACCTAGTGTGTCTTTTGCTTGTCAAAATGCAGATTGTACAAGTCTTGGATACCAAACTTCATGTGGTAGTTTAGATGCTCGTGGTAACATCTCTTATGCATTCAATAGCTATTACCAAGTGAATGACCAGATTGACAGTGCATGCAAATTCCCTGGCCTTTCTGTTGTCACTGACAAAGATCCTTCTACTGGAGATTGCAAATTCAAAATCATGATCCAGACAGATTCTGCTGGCCTGCATGGGAATGGGAGAATTTGGCATCTCTTGGTGTTTTTGTTTTTCACTCTTCTGTGA 1431 0.4333 MGCGRFKGCLALVLCAALLEGLVSGIGVNWGTQLTHPLPSSTVVKMLKDNGIQKVKLFDADPDILNALKKSGIQVMVGIPNEMLYSLANSMQAAEKWVSKNVSAHVSSGGVDIRYVAVGNEPFLSTYNGSFESTTLPALQNIQAALVKASLGNQVKVTVPLNADVYQSAQVPSDGDFRQDIHDLMVEIVKFLSQNNAPFTVNIYPFISLYADPNFPVDYAFFNGFQSPINDNGRIYDNVFDANHDTLVWALQKNGFGNMPIIVGEVGWPTDGDRNANLQYAQRFNQGFMSRYVAGKGTPMRPGPMDAYLFSFLDEDSKSIQPGNFERHWGLFYYDGQPKYQLNMGSRTNGLVAATGIAYLAKKWCILKPSANLNDDQVAPSVSFACQNADCTSLGYQTSCGSLDARGNISYAFNSYYQVNDQIDSACKFPGLSVVTDKDPSTGDCKFKIMIQTDSAGLHGNGRIWHLLVFLFFTLL* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00562 476 FunFam Glucan endo-1,3-beta-glucosidase 5 25 350 - -
Lapu8g00562 476 SUPERFAMILY (Trans)glycosidases 26 343 IPR017853 -
Lapu8g00562 476 Pfam Glycosyl hydrolases family 17 26 343 IPR000490 GO:0004553|GO:0005975
Lapu8g00562 476 FunFam Glucan endo-1,3-beta-glucosidase 8 359 456 - -
Lapu8g00562 476 Gene3D - 359 457 - -
Lapu8g00562 476 Gene3D Glycosidases 25 350 - -
Lapu8g00562 476 Pfam X8 domain 363 432 IPR012946 -
Lapu8g00562 476 ProSitePatterns Glycosyl hydrolases family 17 signature. 259 272 IPR000490 GO:0004553|GO:0005975
Lapu8g00562 476 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 16 436 IPR044965 GO:0004553|GO:0005975
Lapu8g00562 476 SMART X8_cls 363 447 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00562 Lapu-Chr8 22999228 23002717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00562 6 456 Glycoside Hydrolase AT4G31140 71.053 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00562 K19893 - gmx:100790297 887.486
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu8g00562 8 22999228 23002717 Lapu9g01179 9 25478632 25480443 PCT
Lapu9g01824 9 33098687 33102986 Lapu8g00562 8 22999228 23002717 PCT