Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01179 ATGGCTCGAGTGGAGTTCTCTATCTGGGGGTTTTGTTTGATATTGGTTTTAGTTCAATACCAATCACAAGATGCCCACGGTGCAGAGTCTGTACCAGGTCTTGGCATCAATTGGGGTACATTAGCATCCAGCCCTTTGAATCCTAACATCGTGGTTAATATGTTGAAAGACAATGGGATCAAGAAGGTAAAACTTTTCGATGCAGATCCTTGGACCGTGGGTGCTTTGTCTGGAACAGACATTGAAGTCATGGTTGGAATTCCTAATGATCAATTGAGTAAATTTGCTGGAAGTAGCCATAATGCAGAAGATTGGGTGAAAAAAAACATCACCAAACATCTTCATGGTCATCATGGGGCCGTAAACATCAGATACGTATCTGTTGGAAATGAACCATTCATGAAAGATTACAAGGGTGCGTATGTGAAGACCACATTCCCAGCAATGCAAAATATTCAGAGGGCCCTCGACAAGGCTGGTCTTGGAGACACAGTGAAGGTTACTACAGCCTTAAATGCTGATGTTTACGAGTCTTCTTCGAACAAGCCATCAGATGGAAATTTTCGGAGTGACATTCGTGACGCTATAGAACAAATACTGAGTTTCCTTCACGATAGGAACTCACCATTTCTAGTCAACATATACCCTTTCCTTAGTCTCTACCAAGATGACAGTTTTCCAGAAGAATTCGCCTTCTTTGACGGTCAAGGAAGAACAGTTCAAGACAACAACGAGCAATATAGTAATGCGTATGACGCAAATTTAGACACCCTTGTTTGGTCATTGAGAAAAGCTGGTTACCCTGACTTGAGAATTGTGGTTGGTGAAATTGGATGGCCAACTGATGGTAACAAAAATGCTAATAACAACAATGCAAAAAGGTTCTACCATGGGCTACTCAAGAAAATGGCAAGCAACCAGGGAACCCCACTTCGCCCTGGAGCCATGCAGATGTATCTATTTTCTCTTTCTGATGAGAACATGAAGAGTATTGAACCTGGCAAATTTGAGCGTCACTGGGGAATTTTTGGCTACGATGGAAGTGCTAAGTTTCCTATTGATTTTTCTGGTCAGGGACAAGATAAATGGCCTATAGCAGCCAAAGGTGTTGTGTACCAAGAACGTAAATGGTGTGTCCTAAAGAGTGATGTTAAGAACTTGAGCCTTGTACCAAGTGCACTAGACTACGCTTGTGCTGGTGCGGATTGCACAAGCTTAGGATTTGGTTGTTCTTGTGGAAATTTAGACCTAGCTAGCAATGCTTCATATGCTTTCAACCAGTACTTTCAATCAAGGGACCAAAGTGTTGAGGCTTGTAATTTCAATGGATTAGCCACTATTGTGAACCAGAATCCATCCATAGGAAGTTGCATATTCCCTATAGAAATTGAGAGCAGTGGTGACATGCTAAGAGCAATTCATACTCTCGGAACCCTTTTGATTGGATTGATATTGTTTTTTATCACATTTGCATAG 1476 0.4167 MARVEFSIWGFCLILVLVQYQSQDAHGAESVPGLGINWGTLASSPLNPNIVVNMLKDNGIKKVKLFDADPWTVGALSGTDIEVMVGIPNDQLSKFAGSSHNAEDWVKKNITKHLHGHHGAVNIRYVSVGNEPFMKDYKGAYVKTTFPAMQNIQRALDKAGLGDTVKVTTALNADVYESSSNKPSDGNFRSDIRDAIEQILSFLHDRNSPFLVNIYPFLSLYQDDSFPEEFAFFDGQGRTVQDNNEQYSNAYDANLDTLVWSLRKAGYPDLRIVVGEIGWPTDGNKNANNNNAKRFYHGLLKKMASNQGTPLRPGAMQMYLFSLSDENMKSIEPGKFERHWGIFGYDGSAKFPIDFSGQGQDKWPIAAKGVVYQERKWCVLKSDVKNLSLVPSALDYACAGADCTSLGFGCSCGNLDLASNASYAFNQYFQSRDQSVEACNFNGLATIVNQNPSIGSCIFPIEIESSGDMLRAIHTLGTLLIGLILFFITFA* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01179 491 Gene3D - 370 465 - -
Lapu9g01179 491 Pfam Glycosyl hydrolases family 17 34 355 IPR000490 GO:0004553|GO:0005975
Lapu9g01179 491 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 19 447 IPR044965 GO:0004553|GO:0005975
Lapu9g01179 491 SMART X8_cls 376 459 IPR012946 -
Lapu9g01179 491 FunFam Glucan endo-1,3-beta-glucosidase 5 33 361 - -
Lapu9g01179 491 Pfam X8 domain 376 446 IPR012946 -
Lapu9g01179 491 FunFam Glucan endo-1,3-beta-glucosidase 8 372 468 - -
Lapu9g01179 491 SUPERFAMILY (Trans)glycosidases 34 355 IPR017853 -
Lapu9g01179 491 ProSitePatterns Glycosyl hydrolases family 17 signature. 270 283 IPR000490 GO:0004553|GO:0005975
Lapu9g01179 491 Gene3D Glycosidases 33 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01179 Lapu-Chr9 25478632 25480443 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01179 28 477 Miscellaneous Gene Families AT5G64790 54.000 0.0 525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01179 - - gmx:100794658 823.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01179 9 25478632 25480443 Lapu9g01179 9 25478632 25480443 ECH
Lapu8g00562 8 22999228 23002717 Lapu9g01179 9 25478632 25480443 PCT