Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00530 ATGAGGCATTCTCATATTTTACCACTAGCATTGTCCTTATATTTTCTTACTTTGTTTCTTCCCACCCAAGCTAGGTACCATTTCCATAAAAAACACAAGCACTCATATTATCATAATGCACCTGAAATTTCACCATCTCCTTCTCCACTGTCTGGACCTTCTGGTGCCCCTGATGAAGCTCCTTGTCCTAGCCCCACTGTTGATGAGAACTACCACAATACATCTAATAACTTGTTTGATGTTCGAGCATTTGGGGCCATTGGAGATGGAGTAACTGATGATACCGAGTCATTCAAGATGGCATGGGACACTGCCTGCCAAAGTGAATCAGAGGTTAAAGCTATCCTTGTTCCCCACGGTTTCTCCTTCATCATTCAATCTACTATTTTCACAGGTCCTTGTAAAGGTGGCTTAGTACTAAAGGTTGATGGCACTCTTATGCCACCTGATGGACCAGAATCTTGGCCAAAGAACAACAGTAGGCGTCAATGGCTTGTCTTTTATAGAATCAATGGGATGTCACTTGAAGGAAGTGGATTGATAGATGGGAGAGGAGAAAAATGGTGGGACCTCCCTTGTAAGCCTCATAAGGGACCCCATGGGACAACATCTCCAGGACCTTGCGACAGCCCTGTTGCCATAAGGTTTTTCATGAGTTCCAACTTGACTGTACAAGGACTTAGGATCAAGAACAGCCCTCAATTCCACTTCAGATTTGATGGCTGCGAAAGCGTCCACGTGGAATCAATCTACATAACAGCTCCAGCACTAAGCCCCAACACTGATGGAATACACATAGAAAATACCAATGACGTCAAAATATACAATTCGGTCATTTCCAATGGTGATGACTGCGTGTCCATTGGAGCCGGTTGCCATGATGTTGATATAAAGAACATAACATGTGGACCTGGTCATGGTATAAGCATTGGTAGTCTGGGAAATCACAACTCCAGAGCCTGTGTTTCAAACATTACGGTGACGGACTCGGTTATAAAAGTGTCAGATAACGGGGTTAGAATCAAGACATGGCAAGGTGGATCAGGATCAGTATCAGGAGTGACATTTAGTAATATTCACATGGAAAGTGTGAGAAACCCCATTATAATCGATCAGTTTTACTGCCTCAGTAAGGATTGCGCCAACAAGACCTCTGCAGTCTTTGTATCGAATATATCTTACACAAACATAAAGGGAACATATGATATAAGGCACCCTCCTATGCATTTTGCTTGCAGTGACTCTGTGCCATGCACCAACTTGACCCTCTCAGAAATTGAGCTTCTTCCAGCTCAAGGAGACATAGTGCTTGATCCTTACTGCTGGAGTGCCTATGGAAACTCGGAGACACTAACCATTCCCCCAGTCTCCTGCTTGCTTCAAGGCCTTCCTCAGTCCATTTCAGGCAATGACATAGATCATTGCTAA 1428 0.4384 MRHSHILPLALSLYFLTLFLPTQARYHFHKKHKHSYYHNAPEISPSPSPLSGPSGAPDEAPCPSPTVDENYHNTSNNLFDVRAFGAIGDGVTDDTESFKMAWDTACQSESEVKAILVPHGFSFIIQSTIFTGPCKGGLVLKVDGTLMPPDGPESWPKNNSRRQWLVFYRINGMSLEGSGLIDGRGEKWWDLPCKPHKGPHGTTSPGPCDSPVAIRFFMSSNLTVQGLRIKNSPQFHFRFDGCESVHVESIYITAPALSPNTDGIHIENTNDVKIYNSVISNGDDCVSIGAGCHDVDIKNITCGPGHGISIGSLGNHNSRACVSNITVTDSVIKVSDNGVRIKTWQGGSGSVSGVTFSNIHMESVRNPIIIDQFYCLSKDCANKTSAVFVSNISYTNIKGTYDIRHPPMHFACSDSVPCTNLTLSEIELLPAQGDIVLDPYCWSAYGNSETLTIPPVSCLLQGLPQSISGNDIDHC* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00530 475 FunFam Polygalacturonase At1g48100 family 67 462 - -
Lapu7g00530 475 Gene3D - 65 461 IPR012334 -
Lapu7g00530 475 SMART pbh1 292 312 IPR006626 -
Lapu7g00530 475 SMART pbh1 269 290 IPR006626 -
Lapu7g00530 475 SMART pbh1 322 343 IPR006626 -
Lapu7g00530 475 SMART pbh1 351 372 IPR006626 -
Lapu7g00530 475 SMART pbh1 242 268 IPR006626 -
Lapu7g00530 475 Pfam Glycosyl hydrolases family 28 110 428 IPR000743 GO:0004650|GO:0005975
Lapu7g00530 475 ProSitePatterns Polygalacturonase active site. 299 312 IPR000743 GO:0004650|GO:0005975
Lapu7g00530 475 PANTHER - 77 447 - -
Lapu7g00530 475 MobiDBLite consensus disorder prediction 46 60 - -
Lapu7g00530 475 SUPERFAMILY Pectin lyase-like 76 463 IPR011050 -
Lapu7g00530 475 MobiDBLite consensus disorder prediction 41 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00530 Lapu-Chr7 5937324 5939315 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00530 75 475 Glycoside Hydrolase AT1G02460 72.277 0.0 631
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00530 - - gmx:100792285 893.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g00530 7 5937324 5939315 Lapu7g00530 7 5937324 5939315 ECH
Lapu6g00893 6 9144413 9146667 Lapu7g00530 7 5937324 5939315 ECH
Lapu6g01858 6 18356540 18360341 Lapu7g00530 7 5937324 5939315 ECH
Lapu6g00893 6 9144413 9146667 Lapu7g00530 7 5937324 5939315 PCT