Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00893 ATGAAGCATTCTCCAATTCTACCACTAGCGTTCTCTATATTTTTCCTTACTTTATTTCTTCTGGTACAAGCTAGGCATCATTCTCATACAAAACACAAGCACTCACATTCTCACAAATCTTCTAAACATTCAAAGCCTGCACCTCCTAGCCCTCCTCATAATGAGAACAATAACAATGCCTCAGGCGTTTTGGATGTACGAACATTTGGAGCAATAGGAGATGGAAAAACAGATGATACAGAGTCATTTAAGATGGCATGGGACACTGCTTGCCAAAGTGAATCAGCAGTTAATGTTATTCTTGTACCCCAAGGTTTCTCTTTCCTCATTCAGTCCACTATCTTCACTGGTCCTTGTCAAGGTCTCATGGTGTTGAAGGTTGATGGCACCCTTATGCCACCTGATGGACCCGAATCTTGGCCAAAGAACAACAGTAGGCACCAATGGTTGGTCTTTTATAGAATCAATGGAATGTCACTGGAAGGAAGTGGTTTAATAGATGGGAGAGGAGAAAAATGGTGGGACCTCCCATGTAAGCCTCACAAGGGACCTAATGGGACAACACCCCCTGGACCCTGTGATAGCCCAATTGCCATAAGGTTTTTTATGAGTTCCAACTTGACTGTGCAAGGACTAAGGATAAAGAACAGCCCCCAATTCCATTTCAGATTTGATGGCTGCAAAAACGTCCACATAGAATCAATCTACATAACAGCTCCAAAACTTAGCCCCAATACTGATGGAATTCACATAGAAAATACAAATGACGTGAAAATATACAATTCTGTTATTTCTAATGGTGATGATTGTGTATCCATTGGATCCGGCAGCAATGATGTCGATATTAAGAACATTACATGTGGACCTGGTCATGGAATTAGCATTGGTAGTCTGGGGAATCACAACTCTCGAGCCTGTGTTTCAAACATTATGGTGAGAGACTCACTCATAAAAGTGACAGATAATGGGGTTAGGATCAAGACTTGGCAAGGTGGATCAGGATCAGTATCTGGAGTGACATTCAGCAATATTCATATGGTTAGTGTAAGAAATCCCATCATAATTGACCAATTCTACTGCCTCACTAAGGAGTGCACAAACAAGACCTCTGCAGTATCTGTATCAAATATTATTTACACAAACATAAAGGGGACTTATGATATAAGGAGCCCCCCTATGCGTTTTGCTTGCAGTGACTCTGTCCCATGCACCAACTTAACACTCTCAGAAATTGAGCTTCTTCCAGCCCAAGGAGACATAGTGCATGACCCTTTCTGTTGGAATGCATATGGAGATTTGGAGACACTAACCATTCCACCAGTCTCATGCTTGCTGGAGGGAACTCCTCAATCCGTGTTAGACTTTGACATAACTCGTTGCTGA 1383 0.4201 MKHSPILPLAFSIFFLTLFLLVQARHHSHTKHKHSHSHKSSKHSKPAPPSPPHNENNNNASGVLDVRTFGAIGDGKTDDTESFKMAWDTACQSESAVNVILVPQGFSFLIQSTIFTGPCQGLMVLKVDGTLMPPDGPESWPKNNSRHQWLVFYRINGMSLEGSGLIDGRGEKWWDLPCKPHKGPNGTTPPGPCDSPIAIRFFMSSNLTVQGLRIKNSPQFHFRFDGCKNVHIESIYITAPKLSPNTDGIHIENTNDVKIYNSVISNGDDCVSIGSGSNDVDIKNITCGPGHGISIGSLGNHNSRACVSNIMVRDSLIKVTDNGVRIKTWQGGSGSVSGVTFSNIHMVSVRNPIIIDQFYCLTKECTNKTSAVSVSNIIYTNIKGTYDIRSPPMRFACSDSVPCTNLTLSEIELLPAQGDIVHDPFCWNAYGDLETLTIPPVSCLLEGTPQSVLDFDITRC* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00893 460 SMART pbh1 307 328 IPR006626 -
Lapu6g00893 460 SMART pbh1 277 297 IPR006626 -
Lapu6g00893 460 SMART pbh1 254 275 IPR006626 -
Lapu6g00893 460 SMART pbh1 336 357 IPR006626 -
Lapu6g00893 460 SMART pbh1 227 253 IPR006626 -
Lapu6g00893 460 PANTHER - 63 431 - -
Lapu6g00893 460 FunFam Polygalacturonase At1g48100 family 52 447 - -
Lapu6g00893 460 MobiDBLite consensus disorder prediction 29 43 - -
Lapu6g00893 460 Pfam Glycosyl hydrolases family 28 91 413 IPR000743 GO:0004650|GO:0005975
Lapu6g00893 460 SUPERFAMILY Pectin lyase-like 62 450 IPR011050 -
Lapu6g00893 460 ProSitePatterns Polygalacturonase active site. 284 297 IPR000743 GO:0004650|GO:0005975
Lapu6g00893 460 Gene3D - 49 446 IPR012334 -
Lapu6g00893 460 MobiDBLite consensus disorder prediction 29 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00893 Lapu-Chr6 9144413 9146667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00893 58 460 Glycoside Hydrolase AT1G02460 71.429 0.0 619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00893 - - gmx:100778836 849.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00893 6 9144413 9146667 Lapu6g00893 6 9144413 9146667 ECH
Lapu6g00893 6 9144413 9146667 Lapu7g00530 7 5937324 5939315 ECH
Lapu6g01858 6 18356540 18360341 Lapu6g00893 6 9144413 9146667 ECH
Lapu6g00893 6 9144413 9146667 Lapu7g00530 7 5937324 5939315 PCT