Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01858 ATGGACTTGAAACCAGCAATGAGTCTCACTCGCTGGTCTTTTATCTTATGGATTGCCATGATTGTTTTTATCCATAATTGGGATAATGTGGAAGGAAGATACCACTATCACAAGGGGCAGAAGAAAAGTCCCCCTGCTAAGTCCCCTGCACCAGAGGAACCTTCTTCACCTCCTTCCATTTCCCCTGGTGTTCCCTCTGACCCTTATCCCAATGATCCTGGGGATTCATCTTCACACTGCATTTTCGATGTAAGATCCTTTGGGGCAGTCGGAGATGGTTCCGCTGATGACACGGAAGCATTCGTGGCAGCATGGAAAGCAGCGTGTGCAGTAGAGTCAGGGGTTGTTCTTGTTCCAGAAAATTACTGTTTCAAGATAACTTCAACTATCTTTACCGGTCCATGCAAGCCTGGACTAGTATTTCAAGTGGATGGTACTCTCATGGCACCAGATGGACCAGAATCTTGGCCTAAGGAAGACAGCCACAGTCAATGGCTTGTGTTCTATCGACTTGATCAAATGACTCTTACTGGGAAAGGAACCATAGAAGGCAATGGGGAAAAGTGGTGGGATCTTCCTTGCAAACCTCACCGGGGTCCCGATGGAAAAACTGTATCAGGACCATGTGATAGCCCTACAATGATACGGTTCTTCATGAGCTCCAATTTGGTGTTGAGTGGGGTGAAAATTCAAAACAGTCCCATGTTCCACGTGAAATTCGATGGTTGCCAAGGAGTACTGATAGACAAGTTGTCAATTTCTTCTCCTAAACTCAGTCCAAATACTGATGGAATTCATTTAGGAAACACAAAGGGTGTTGGGATATATAACTCCATGATAAGCAATGGTGATGATTGCATCTCGATTGGACCCGGGTGCTCAGACGTGGACATAGAGGGTGTTACTTGTGCTCCTACCCATGGCATTAGCATTGGAAGCCTCGGAGTGCACAATTCGCAGGCATGTGTCTCAAACTTAACTGTTCGCAACACCATCATAAAGGAATCAGACAATGGCCTCAGGATCAAGACATGGCAAGGTGGAACGGGCTCAGTGACTGGCCTCAGATTTGAAAACATCCAAATGGAGAATGTGAGGAACTGCATCATCATTGACCAGTACTACTGCTTGTCCAAGGAGTGTCTGAACCAAACATCAGCAGTGCATGTAAACGATGTGATATATAGGAACATAAAGGGTACTTATGATGTGAGAACTCCTCCTATACACTTTGCTTGCAGTGACACTGTGGCATGCACCAACATAACACTCTCTGAGATTGAGCTTTTGCCATATGAAGGGGAATTACTAGATGACCCTTTTTGCTGGAATGCTTATGGAACTCAAGAGACCATGACTATACCTCCACTTGATTGCTTGAGAGAAGGTGAACCTGAAACAGTTGTGGAGCTCTCTGCCTATGAATGTAGGAGTTAA 1437 0.453 MDLKPAMSLTRWSFILWIAMIVFIHNWDNVEGRYHYHKGQKKSPPAKSPAPEEPSSPPSISPGVPSDPYPNDPGDSSSHCIFDVRSFGAVGDGSADDTEAFVAAWKAACAVESGVVLVPENYCFKITSTIFTGPCKPGLVFQVDGTLMAPDGPESWPKEDSHSQWLVFYRLDQMTLTGKGTIEGNGEKWWDLPCKPHRGPDGKTVSGPCDSPTMIRFFMSSNLVLSGVKIQNSPMFHVKFDGCQGVLIDKLSISSPKLSPNTDGIHLGNTKGVGIYNSMISNGDDCISIGPGCSDVDIEGVTCAPTHGISIGSLGVHNSQACVSNLTVRNTIIKESDNGLRIKTWQGGTGSVTGLRFENIQMENVRNCIIIDQYYCLSKECLNQTSAVHVNDVIYRNIKGTYDVRTPPIHFACSDTVACTNITLSEIELLPYEGELLDDPFCWNAYGTQETMTIPPLDCLREGEPETVVELSAYECRS* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01858 478 PANTHER - 79 448 - -
Lapu6g01858 478 Gene3D - 74 469 IPR012334 -
Lapu6g01858 478 SMART pbh1 293 313 IPR006626 -
Lapu6g01858 478 SMART pbh1 270 291 IPR006626 -
Lapu6g01858 478 SMART pbh1 243 269 IPR006626 -
Lapu6g01858 478 SMART pbh1 352 373 IPR006626 -
Lapu6g01858 478 SMART pbh1 323 344 IPR006626 -
Lapu6g01858 478 SUPERFAMILY Pectin lyase-like 80 475 IPR011050 -
Lapu6g01858 478 Pfam Glycosyl hydrolases family 28 116 429 IPR000743 GO:0004650|GO:0005975
Lapu6g01858 478 FunFam Polygalacturonase At1g48100 family 70 463 - -
Lapu6g01858 478 MobiDBLite consensus disorder prediction 47 69 - -
Lapu6g01858 478 MobiDBLite consensus disorder prediction 38 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01858 Lapu-Chr6 18356540 18360341 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01858 15 475 Glycoside Hydrolase AT1G48100 72.414 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01858 - - gmx:100785528 897.116
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01858 6 18356540 18360341 Lapu6g01858 6 18356540 18360341 ECH
Lapu6g01858 6 18356540 18360341 Lapu6g00893 6 9144413 9146667 ECH
Lapu6g01858 6 18356540 18360341 Lapu7g00530 7 5937324 5939315 ECH