Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00111 ATGAGAACAGGAAGCTGCGCTGTGCAACAGGGTCTAACCCCAGAAGCTGCAAGCATAGTGAAGCAAGCAGTGACACTGGCGAAGCGTCGTGGGCACGCGCAAGTGACGCCTCTCCACGTGGCAAACACGATGCTCTCGATCACCAACGGGCTTCTAAGAACCGCGTGTCTCCAATCCCACTCTCACCCTCTTCAGTGCAAGGCCTTGGAGCTTTGCTTCAACGTTGCGCTGAATCGGTTGCCAGCTTCAACTTCTTCCAGCCCCATGTTGCAAGGTTCTCACCACCACCACTCTCACGCCTGTCCCTCTATCTCGAACGCTTTGGTTGCTGCGTTCAAACGCGCTCAAGCGCACCAACGACGTGGATCCATTGAGAATCAACAACAACCTCTCCTGGCAGTGAAAATAGAACTCGAGCAACTCATTATTTCTATCTTGGACGATCCTAGTGTTAGCCGAGTCATGAGAGAGGCTGGGTTCTCTAGCACCCAAGTGAAAAGCAACGTTGAGCAAGCGGTTTCTTTGGAAATATGCTCTCAGAATAATGGTAGTGGTAATAGCAATAATAATAGTAATACCAAGGCAAAGGAAAACAGTAATATTGGAGAGAAAGGGTTGGTGTTGGATCCCATTAGGGGTGAGGATGTTGCTAGTGTTATTGATAATTTGGGGAGTCATAGAAAGAGGAGTGTTGTGATAGTAGGAGAGTGTGTCGCTAGTTTGGAGAGTGTAGTTAGAGGAGTGATGGAAAAGGTTGATAAAGGGGATGCTGGTGAGTGTCTCAGGGGTGTCAAGTTTATTTCTCTTTCTCTTTCCTCTTTCGCAAGTGTCTCGAGAGTGGAAGTTGAGCAAAAGGTTGAAGAGCTTAGGAGTCTTGTGAAGGCAAGTGAACACAGCAAAGGGTACGTTTTGTATTTGGGAGATCTTAAATGGGTGTTTGAGTATAGGGCTCGTGGATCACGAGGGAGAGCTTGTTATTGTCCTGTGGATCACATGGTGATGGAGATTGGGAAGCTTGTGAGTGGGATTGAAGAGAATGGTGGAAGGTTTTGGTTGATGGGTGTTGCCACTTTTCAAGCTTACATGAGATGCAAAAATGGCCAGCCATCGTTGGAGACTCTTTGGGATCTTCATCCTATTACTATCCCTGCGGGAAGCTTGCGCTTGAGTCTCATCACTGACAGTGGTCTACAAAATCAGGCCATAAACAAGAAAGCTGACAGCAGGACTAGCTGGCTCTTACTCGAAGGAGTGGGGGATGATCAGAAACAACAACCTTGCTTCGCGGAACCTTCCACCAAGAATGAGACCGAAGTTCGAAGCTTGCAAAGCAGTACTTGTAATAGTGACTCCTCAAGTTCAACCCTCCCTGCATGGCTCCAACAGTACAAAAATGAGAATAAAGGAATCACCTATAATGATCAGAATTGTGTCCCAGTGGGAGAGCTTTGCAAAAAGTGGAACTCTATGTGTAGTTCAATCCAAAAGCAACCTTATCCTTCAGACAAAACCCTCACATTATCCTCAGTATCTCCCTCTTCCTCAACCTCAGGCTTCTCATACGAACAACAACATTCTAATTTGCACCAAACCCATCATGAGTGGCAAGTGGCTTCACCCAAAGACTCATTGAACAACCACCATTTCTGGATCCCAAAAAATGGTTGCAGCAACACCAATGAACCGACTTTGCGAGTGTACATTCCAGAGAGCAAGGACACCACCACAAAGCAACCATTCTCATCTCCCAACCCAAGTTCCAACCCTAATTCCGCTTCTTCCAGTGACATCATGGAGGTGGAGCACGTGAGCAGGTTCAAAGAGTTAAACTCGGAGAACCTGAAAACACTGTGCAATGCTTTGGAGAAGAAAGTGCCGTGGCAGAAGGATATAATACCGGAAATTGCTAGCACCATTTTGCAATGTCGTGCTGGCATGGTGAGAAGAAAAGGAAAAGTGAGAAACAGTGAAGAAGGGAAAGAAGAAACGTGGTTAGTCTTCCAAGGTGTTGATGTGGAAGCCAAAGAGAAAATAACAAGAGAATTGGCTCGGCTTGTTTTTGGATCCCACAACGACGTCGTTTCCATAGCATTGAGTAGTTTCGCGTCAACAAGAGCAGATTCAACTGAGGATTATAGCAGGAACAAAAGATCGAGAGAAGAAACAAGTTGCAGTTACATTGAGAGGTTCGCAGAAGCAATGATGAACAACCCTCATAGAGTGTTTGTTGTTGAAGATATAGAGCAAGCGGATTATTGTTCTCAACTTGGTTTCAAAAGGGCCATGGAGAGAGGAAGTGTTGCGGATTCAAACGGTGAAGAGATTGCACTTTGTGACGCAATCATCATTCTAAGCTGTGAAAGTTTCAGTTCAAGATCAAGGACTTGTTCTCCTTCAGTAAAACAAAAATCGATGACTGAGGAAGAAAAGAATGGTGACGTTGGTACTTTGGAGGAGACAAGCCCTTGTGTTTCTTTGGATTTGAATATTTCCATTGATGATGAGAACGAGGTTGAGGATCGATCAGTGGATGAAATCGGGCTTCTTGAATCAGTAGACAGAAGGATTATATTCAACTTTCAAGAATTGTGA 2592 0.4537 MRTGSCAVQQGLTPEAASIVKQAVTLAKRRGHAQVTPLHVANTMLSITNGLLRTACLQSHSHPLQCKALELCFNVALNRLPASTSSSPMLQGSHHHHSHACPSISNALVAAFKRAQAHQRRGSIENQQQPLLAVKIELEQLIISILDDPSVSRVMREAGFSSTQVKSNVEQAVSLEICSQNNGSGNSNNNSNTKAKENSNIGEKGLVLDPIRGEDVASVIDNLGSHRKRSVVIVGECVASLESVVRGVMEKVDKGDAGECLRGVKFISLSLSSFASVSRVEVEQKVEELRSLVKASEHSKGYVLYLGDLKWVFEYRARGSRGRACYCPVDHMVMEIGKLVSGIEENGGRFWLMGVATFQAYMRCKNGQPSLETLWDLHPITIPAGSLRLSLITDSGLQNQAINKKADSRTSWLLLEGVGDDQKQQPCFAEPSTKNETEVRSLQSSTCNSDSSSSTLPAWLQQYKNENKGITYNDQNCVPVGELCKKWNSMCSSIQKQPYPSDKTLTLSSVSPSSSTSGFSYEQQHSNLHQTHHEWQVASPKDSLNNHHFWIPKNGCSNTNEPTLRVYIPESKDTTTKQPFSSPNPSSNPNSASSSDIMEVEHVSRFKELNSENLKTLCNALEKKVPWQKDIIPEIASTILQCRAGMVRRKGKVRNSEEGKEETWLVFQGVDVEAKEKITRELARLVFGSHNDVVSIALSSFASTRADSTEDYSRNKRSREETSCSYIERFAEAMMNNPHRVFVVEDIEQADYCSQLGFKRAMERGSVADSNGEEIALCDAIIILSCESFSSRSRTCSPSVKQKSMTEEEKNGDVGTLEETSPCVSLDLNISIDDENEVEDRSVDEIGLLESVDRRIIFNFQEL* 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00111 863 MobiDBLite consensus disorder prediction 573 596 - -
Lapu7g00111 863 MobiDBLite consensus disorder prediction 180 199 - -
Lapu7g00111 863 Gene3D - 207 383 IPR027417 -
Lapu7g00111 863 Gene3D - 592 827 IPR027417 -
Lapu7g00111 863 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 859 - -
Lapu7g00111 863 Pfam Clp amino terminal domain, pathogenicity island component 136 173 IPR004176 -
Lapu7g00111 863 Pfam Clp amino terminal domain, pathogenicity island component 23 50 IPR004176 -
Lapu7g00111 863 Coils Coil 279 299 - -
Lapu7g00111 863 SUPERFAMILY Double Clp-N motif 12 169 IPR036628 -
Lapu7g00111 863 Gene3D - 9 174 IPR036628 -
Lapu7g00111 863 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 604 788 IPR027417 -
Lapu7g00111 863 ProSiteProfiles Clp repeat (R) domain profile. 8 176 IPR004176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00111 Lapu-Chr7 1190481 1195344 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00111 - - var:108320189 1525.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g00111 7 1190481 1195344 Lapu6g00239 6 2010635 2016275 ECH
Lapu7g00111 7 1190481 1195344 Lapu7g00111 7 1190481 1195344 ECH
Lapu7g00111 7 1190481 1195344 Lapu6g02380 6 23495846 23502003 ECH