Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02380 ATGCCGACGCCGGTAAGCACCGCGAGGCAGTGTCTCACCGACGAGGCGGCGCGTGCGCTAGACGACGCCGTCACGGTTGCCCGCCGCCGCAGCCACGCCCAGACCACCTCCCTCCACGCTGTCTCCGCCCTGCTTTCCCTCCCTTCCGCAGCGCTCCGCGACGCCTGCGCTCGCTGCCGGAGCTGTTCCTACTCCCCCCGTCTCCAGTTCCGCGCCCTCGAGCTCTCCGTCGGCGTCTCCCTCGATCGCCTCCCCACAACAAAAACAGCCGCCTCCGGCGGGGCGGAGGGAGGCGTCGGCGAGGAGGGTCCCCCTGTCTCGAACTCCCTCATGGCCGCCATAAAGCGCTCCCAGGCGAACCAGCGGCGCCACCCGGATAGCTTCCACCTTATGCAGATGATGCAGCAGCAGCAGCATCAAACGACGTCGTTGCTGAAAGTCGAACTCAAACACTTCATTCTCTCTATTCTCGACGACCCTATCGTGAGTCGCGTCTTCGGCGAAGCCGGTTTCAGAAGCTACGACATCAAGCTCGCGCTTCTTCAACCACCTCCACCTTCAAGAATCTTCTCGCGGTTAACCCCTCCGGTTTTCCTCTGCAATCTCGAACCGGTTCAGAAGACTGGTTCGCTCCAGCCCGGTTCTCGGCTGGACGAGAATTGCCGCAGAATCGTGGAGGTGGTGATGAGGAAGAGCAAAAGGAACCCTCTTTTGATGGGGGTGTACGCGAAAATCTCTCTCAAGAGCTTCATCGAATGCGTGGAAACTCGTAAAGGTGGGGTCTTGCCCTGTGAGCTGAATGGGTTGAGTGTGGTTTCGGTGGAGAAGGAGATTGGGGAGTTTTTGAGGGAAGGTGGGAGCGGAGGGAAGATTTTCGAGGATGTGGGTCGTTTGGTGGAGCAGTCTTCTGGTGCTGGTGTTGTTGTGTGTTTCGGGGAGATTGAGGTTTTTGTCGGGGGGAATGAGGAGAGTGTTGCGTTTGTGGTCTCGCAGTTGACGAGGTTGTTGGGGGTTCATCTTGGGAAGGTGTGGTTGGTGGGCGTGGCGGGAACCTCGGAGGCCTATTCTAAGTTCCTGAGGTTGTTCCCTACAGTGGACAAGGATTGGGATCTGCATCTCCTGACCATGACCTCTGCCACCCCTTTCATGGAAGGACTCTACCCCAAGTCCAGCTTGATGGGGTCCTTTGTGCCATTTGGTGGGTTCTTTTCTACACCTTCTGAGTTGAAAAATCCCGTTAGCTGTACGAATGCCTCATCTCTAACACGGTGTGACTCATGCAATGAAAAGTGTGAAAAAGAAGTTGCTGATATTTTGAAGGTAGGCCCTGCTACTTCAGCATCTGGTTGCTCGACAAGCTTGCCTTGGTTACAAAAGGCTAATGTGGAGACAAATAGAGGATTGGATGTGGCAAAGACTAATGAAGAAAGCACAAGTTTGAATGGGAAGATCTTCGGATTGCAAAGGAAATGGAGTGATATTTGTCAACGTCTTCATCAAAACCGATCATTACCTGAATTTGATATTTCTAAAACAAGGTTCCAAGTTCCTTCCCTTGAGGGGTTTCAATTTGGTCCAGGAAGTAGTAGCAAAGGTCCATCCCATAGTGAAATCCAATATTCTAAAATTTCTTGCATGTCTATTGAGTCGCAAAGTGCATTTCCATTTAAACAGATATTACCAGTTTCAGTACCTTTTGACACTGTTAGCATCACTGATGAAGCAGATCACATAACAAAAGTTTCTAAGAGTGATATGCATAATACTTGGGTTTGTCCGTCCCCTAAGGCCAATTCGAGCCTACTTGATCACAAATCTTCTTCATCCTTTACTCCTGTGACCACTGATTTGGGATTGGGAACAATATACAAATCAGCCACTCATGAGCCAGACACCCCAAAACTAAGTGATCAGAAGAAGCATTTTCACAACTTGCCGGATTCCCTTTCAAGTGATTTTAATCCTATGAACGAGTGCACTTCACGCCAAATTGTTAGATCTTCTTCATGTTCGGGTCCAAATCTAGAAGGGAATTTTGAAACAGTAGATTTCAAGTCACTATACCATCTTCTCACTGAAAAGGTTGGATGGCAGGATGAGGCCATATATTCTATCAATCAAACTGTGTCGCGTTGTAGATCTGGTGCTGGAAAGCGTAGTAGTGACTCACATGTTAGAGCAGACATCTGGCTTGCGTTCCTTGGACCTGATAGACTTGGGAAAAGAAAACTTGCATCAGCGCTTGCTGAGATTTTATTTGGAAACAAACAAAGCCTAATCACTGTGGATTTGAGCTCCCAAGACAAGTGTTACCCATCAAACTTGATTTTTGAATTCCAGGATTCATATTGTCATGATGTGCTTATGAGGAAGACAGTTGTGGACTATATTGCTTGGGAGCTGAGTAAAAAGCCACATTCAGTTGTCTTTCTTGATAATGTAGATCAAGCAGATTTTCTGGTGCAGAATAGTTTGTTCCAAGCAATAAGAACAGGTAAATTCTCGTACTCGCATGGAAGGGAAATCAGCATCAACAATGCAATATTTATTGTAACCACTAGTGTGTTTAAAGGCAGTGGCCCTTTGAATTTGGAGGAGGATCCTAAAATGTTCCAAGAGGAAAGAATACTAGAAGCTAAAAGATGTCAAATGCAATTATCAGTGGGACATTCTTCCCAGGATGCCAAAAGGAGTGGTTGCACTAATGTTAAGGTTGTTCAAAGAAAAGGGACGTCCAAAACAACATTCCCGAATAAAAGAAAGCTAGTAGAAAGTGGTGATGCTGAAGAGAAAGCATCATGCAAGACATTGAAGCAGGTCATGGAGGCATCAAGGTCCTATCTGGATCTTAACATGCCTCTGGAGGAGGTTGAAGAGGACAACAATTACAATGATTATGAAAGTGAATCCGTAGTTGAAAAATCTGGAGCATGGTTAAAAGACTTGTGCGATCAAGTTGATGAAAAAGTTGTTTTTAGGCCATTCGATTTTGATTCTCTTGCTGAGCAAGTAATAAAAAGCATTGACATACAATTTCAAAAGATGTTTGGATCAGAGTTTATGCTGGAAATAGAGTATGAGGTCATGACACAGATTCTTGCAGCTGCTTGGTTATCTGACAAGAAAAAAGCATTGGAAGATTGGGTTGAACATGTTCTTGGCAGGAGCTTTGCTGAAGCTAAACAGAAGTATCACTTTGCACCAGAATATGTGATGAAACTGGTTAACTGTGGAAGAATTTTTTTGGAAGAACAATCTCCTGGAGTATGCCTTCCTGCTAGAATTAACTTGAACTGA 3297 0.4668 MPTPVSTARQCLTDEAARALDDAVTVARRRSHAQTTSLHAVSALLSLPSAALRDACARCRSCSYSPRLQFRALELSVGVSLDRLPTTKTAASGGAEGGVGEEGPPVSNSLMAAIKRSQANQRRHPDSFHLMQMMQQQQHQTTSLLKVELKHFILSILDDPIVSRVFGEAGFRSYDIKLALLQPPPPSRIFSRLTPPVFLCNLEPVQKTGSLQPGSRLDENCRRIVEVVMRKSKRNPLLMGVYAKISLKSFIECVETRKGGVLPCELNGLSVVSVEKEIGEFLREGGSGGKIFEDVGRLVEQSSGAGVVVCFGEIEVFVGGNEESVAFVVSQLTRLLGVHLGKVWLVGVAGTSEAYSKFLRLFPTVDKDWDLHLLTMTSATPFMEGLYPKSSLMGSFVPFGGFFSTPSELKNPVSCTNASSLTRCDSCNEKCEKEVADILKVGPATSASGCSTSLPWLQKANVETNRGLDVAKTNEESTSLNGKIFGLQRKWSDICQRLHQNRSLPEFDISKTRFQVPSLEGFQFGPGSSSKGPSHSEIQYSKISCMSIESQSAFPFKQILPVSVPFDTVSITDEADHITKVSKSDMHNTWVCPSPKANSSLLDHKSSSSFTPVTTDLGLGTIYKSATHEPDTPKLSDQKKHFHNLPDSLSSDFNPMNECTSRQIVRSSSCSGPNLEGNFETVDFKSLYHLLTEKVGWQDEAIYSINQTVSRCRSGAGKRSSDSHVRADIWLAFLGPDRLGKRKLASALAEILFGNKQSLITVDLSSQDKCYPSNLIFEFQDSYCHDVLMRKTVVDYIAWELSKKPHSVVFLDNVDQADFLVQNSLFQAIRTGKFSYSHGREISINNAIFIVTTSVFKGSGPLNLEEDPKMFQEERILEAKRCQMQLSVGHSSQDAKRSGCTNVKVVQRKGTSKTTFPNKRKLVESGDAEEKASCKTLKQVMEASRSYLDLNMPLEEVEEDNNYNDYESESVVEKSGAWLKDLCDQVDEKVVFRPFDFDSLAEQVIKSIDIQFQKMFGSEFMLEIEYEVMTQILAAAWLSDKKKALEDWVEHVLGRSFAEAKQKYHFAPEYVMKLVNCGRIFLEEQSPGVCLPARINLN* 1099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02380 1098 Pfam AAA domain (Cdc48 subfamily) 731 863 IPR003959 GO:0005524|GO:0016887
Lapu6g02380 1098 ProSiteProfiles Clp repeat (R) domain profile. 8 186 IPR004176 -
Lapu6g02380 1098 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1061 - -
Lapu6g02380 1098 CDD RecA-like_ClpB_Hsp104-like 683 857 - -
Lapu6g02380 1098 Gene3D - 672 893 IPR027417 -
Lapu6g02380 1098 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 680 855 IPR027417 -
Lapu6g02380 1098 Gene3D - 10 182 IPR036628 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02380 Lapu-Chr6 23495846 23502003 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02380 - - gmx:100776148 1790.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02380 6 23495846 23502003 Lapu6g02380 6 23495846 23502003 ECH
Lapu6g02380 6 23495846 23502003 Lapu6g00239 6 2010635 2016275 ECH
Lapu6g00239 6 2010635 2016275 Lapu6g02380 6 23495846 23502003 ECH
Lapu7g00111 7 1190481 1195344 Lapu6g02380 6 23495846 23502003 ECH
Lapu6g02380 6 23495846 23502003 Lapu6g02380 6 23495846 23502003 PCT