Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00239 ATGCCCACGCCCGTCGCAGCGGCGCGTCAATGCCTAACCGCCGACGCCGCCCGCGCCCTCGACGAGGCCGTCTCCGTCGCCCGCCGTCGGGGCCACGCCCAGACCACCTCTCTCCACGCCGTCTCCGCCCTCCTCTCCCTCCCCTCCTCCTCCCTCCTCCGTGACGCCTGCTCACGCGCCCGCAACTGTGCCTATTCCCCACGCCTGCAGTTCAAGGCCCTCGACCTCTGCCTCTCTGTTTCCCTCGACCGTGCGCCGTCGTCGCACAGTCACCTCTCTTCCGATCACGACCCACCCGTCTCCAACTCCCTCATGGCCGCCATCAAACGCTCCCAGGCCAACCAGCGGCGTCACCCTGATAACTTCCACTTCTATCACCACCACCAAACCCTCTCGCACCAACAAACTCAGCATAACCTAAACATAAACCAAAACCACCAACAACCCTTTTCTGTTTCTTCTGTTAAAGTAGAGCTTCAGCATTTGATTCTGTCAATCCTGGACGACCCCGTCGTAAGCCGGGTCTTCGCAGAAGCGGGTTTCCGGAGCTCCGACATCAAACTTGCCATCCTCCGCCCTCTTCGCCCTCGCGGACCACCGATTTTCCTCTGCAATTTATCCGAGCCGCCGCGGCGGTTTCCTTTCTTCTTCGGCGGGGATGACGGTGGCGGCGAGAATTTCCGGCGAATCGGGGAGGTTCTGGTCCGGAGCCGGGGGCGGAATCCACTGCTTCTAGGCGCGTGCGCTGGTGACGCTCTCCGGAGCTTTGCGGAGGCTGTGGAGAAGCGAAGGGAGGGGGTTCTGCCGGTGGAGCTGTCCGGGCTGCAGGTGGTTTGCATTGAGGAGGAGGTGGCGCGTGGGGACACGGAGGGCGTTGGGAAGCGCATGAGGGAGATTGGGAGCTTGGCGGAGAAGTGTGTGGGGCCGGGTGTTGTGGTTAGTTTCGGGGACTTGAAGGGTTTTTTGAGCGATGAAGAAGGTTGTGGTGAGGGTTTGAGGGGTGTGGTTGGGGAATTGGCGAAGCTGTTGCAGGTTCATTATGATAAGTTTTGGTTAATGGGTGCTGCTGCTAGTTATGAGAGTTACTTGAAATTCGTGGGGAAGTTTCCTTGCATAGAGAAAGAGTGGGATTTGCAGCTTCTGCCTATTACCTCTGTCAAGCCTTCTGAATCCTATCAACGCCCCAGGTCCAGCTTAATGGATTCATTTGTGCCATTTGGTGGCTTTTTTTCGTCACAGTCTGATATGAAAGGTCCACCGAATGGATCGTTTTATTGTGTTCCCCACTGTCATCAGTGCGGCGAAAGGTGTGAACATGATGTCCTTGGTGCTTCCAAGGAAAGGTTTTCTGCTTCTTCCGCTGCTGATTCGCTTCAATCTAGCTTGCCTCCGTGGTTACAGATTGCAGAATTTGGCACATCAAAGGGATTGAATGTTAAGACCAAAGATAATGATGTTTTGCTCGATAGTGGTGAATCTGGGCCACTGCATAAGAACTTAGACAAGTTATCCCAGCATCTGCACCAGCGTGATGCAAATACTTTTCCTACTGTTGTGGGGTTTCAGTGTGGTGCTGATAAGAAAAAGGAAGACGCTGACAATTGCAGCAGCAGAGTTACAGACAAATCACCTAGTGAATGCATCAATCTTAACTCCTATGGACCTGTTGGCATACAAATGATGCCTTTGTCACACTCAAGTAGTCCTTTTCCTGCAGTTTTCAAGGCAAAGCAGGAGAAATATACTTCAAAACTTGCTGAGATGTTCCAGAAAGTGGATGATCACGAGTCAGGTGATCTAAGATCGTGCAACATGTCCAATTCAAGCGTGTGTGATGGAAGTCAAATGTCTCCCACATCTGTAACTTCTGTAACCACAGATCTAGGGTTAGGAATATGCTCTTCTCCGACCAGCAATAAGCCAAAGAAACCTACTGTTCAGTATACAATGGAGCCTCCAAAGGAAATCCCTAGTCGGTTTTCTTCAAACTTCAATTTGGCTGATGGGAATATCTTGAAGCATCCATCGCAGTCTTCATCCTGCTTAAGTTTCGACTATTGTGGGCAAGTCGATGCGAAAAATCCCAAATTTCTTTTTGAAGCTCTTTCCAAGGAGGTAAGCTGGCAAGACGAAGCTTTACAGGCAATCATCAAAACAATTGTTTGCAGCTCAACAAAAAGGGTTAAAAACCGTGGAGCAAGTCAGCCTGGAGACATCTGGATGAATTTTGTTGGACCTGATAGACTTGGGAAAAAGAAAATTGCCGTTTCTCTAGCTGAGTTATTGTATGGGAGCCGGGAAAGCTTTATTTTTGTGGATCTAAGTTCTGAAGAAATGAAAGGATGCAATGTGAAATTCAGAGGGAAAACTACCCTTGATTTCATTGTAGGGGAGTGTTGCAAGAAACCCTTATCTGTGGTTTTCCTTGAAAATGTAGACAAGGCAGATATTCTAGCTCAAAAAAGTTTGTCTCAAGCCGTCAAGACAGGAAAAATTACAGACTCACATGGACGAGAAGTTAGCGTAAACAATACTGTGTTTGTTTTATCTTTCTCAGATTACCCAAATAGTTGGATACCAACCGGGGAACCTTCCAACTATTCTGAGGAAAGAATACTGAAGGCAAAGGGGGGAGGTATCAAGCTACACGTTGAACATGTGATTGGAGACAGCCGAAGCCAAAGCATCGGTGTCACTAGCAATTCAATGGATGTCATTCCTAATCTAAATTTCCTAAACAAACGTAAGTTGATTGGTGACAATGAATTTCATGATCCAGACATGCTCTCTGATACAGCTAAAAGGGCACATACAGCATCAGGTTGGCAGTTAGATTTGAATCTCCCAGCCGAAGTGAATGAACAGAAACTAACAAATGAAGGAAACCCTGAACATGTCTCAACTGAGAACCAAAGCCTTTGGTTGCAAAATTTGTGTGATCTGGTTGATGAAACAGTTGTTTTTAAACCTTATGATTTTGATGCACTCGCGGATAAATTGTTGAAAGTGATCAGAGGTAACTTCAACAAGATTCTTGGATCCGAGTGTGTATTACAGATCCAGACAGAAGTGATGGACCAATTACTTACTGCTCAATATGTCTCAGACAGGGATACGGCGGTGGAGAACTGGGTGGAGGAAGTTCTATGTGGAGGATTTACTGAAATACAGAGAAGGTACAACCTCACCGCTAGTTCTATTGTAAAACTTGCTACGTATCCAGAGCTAGCTCCTGGTGTACACCTTCCCCCAAGGATAATTTTAGATTGA 3270 0.4829 MPTPVAAARQCLTADAARALDEAVSVARRRGHAQTTSLHAVSALLSLPSSSLLRDACSRARNCAYSPRLQFKALDLCLSVSLDRAPSSHSHLSSDHDPPVSNSLMAAIKRSQANQRRHPDNFHFYHHHQTLSHQQTQHNLNINQNHQQPFSVSSVKVELQHLILSILDDPVVSRVFAEAGFRSSDIKLAILRPLRPRGPPIFLCNLSEPPRRFPFFFGGDDGGGENFRRIGEVLVRSRGRNPLLLGACAGDALRSFAEAVEKRREGVLPVELSGLQVVCIEEEVARGDTEGVGKRMREIGSLAEKCVGPGVVVSFGDLKGFLSDEEGCGEGLRGVVGELAKLLQVHYDKFWLMGAAASYESYLKFVGKFPCIEKEWDLQLLPITSVKPSESYQRPRSSLMDSFVPFGGFFSSQSDMKGPPNGSFYCVPHCHQCGERCEHDVLGASKERFSASSAADSLQSSLPPWLQIAEFGTSKGLNVKTKDNDVLLDSGESGPLHKNLDKLSQHLHQRDANTFPTVVGFQCGADKKKEDADNCSSRVTDKSPSECINLNSYGPVGIQMMPLSHSSSPFPAVFKAKQEKYTSKLAEMFQKVDDHESGDLRSCNMSNSSVCDGSQMSPTSVTSVTTDLGLGICSSPTSNKPKKPTVQYTMEPPKEIPSRFSSNFNLADGNILKHPSQSSSCLSFDYCGQVDAKNPKFLFEALSKEVSWQDEALQAIIKTIVCSSTKRVKNRGASQPGDIWMNFVGPDRLGKKKIAVSLAELLYGSRESFIFVDLSSEEMKGCNVKFRGKTTLDFIVGECCKKPLSVVFLENVDKADILAQKSLSQAVKTGKITDSHGREVSVNNTVFVLSFSDYPNSWIPTGEPSNYSEERILKAKGGGIKLHVEHVIGDSRSQSIGVTSNSMDVIPNLNFLNKRKLIGDNEFHDPDMLSDTAKRAHTASGWQLDLNLPAEVNEQKLTNEGNPEHVSTENQSLWLQNLCDLVDETVVFKPYDFDALADKLLKVIRGNFNKILGSECVLQIQTEVMDQLLTAQYVSDRDTAVENWVEEVLCGGFTEIQRRYNLTASSIVKLATYPELAPGVHLPPRIILD* 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00239 1089 Pfam Clp amino terminal domain, pathogenicity island component 157 191 IPR004176 -
Lapu6g00239 1089 ProSiteProfiles Clp repeat (R) domain profile. 8 199 IPR004176 -
Lapu6g00239 1089 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 698 855 IPR027417 -
Lapu6g00239 1089 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1058 - -
Lapu6g00239 1089 MobiDBLite consensus disorder prediction 633 654 - -
Lapu6g00239 1089 Gene3D - 10 193 IPR036628 -
Lapu6g00239 1089 Gene3D - 679 875 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00239 Lapu-Chr6 2010635 2016275 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00239 - - gmx:100800606 1790.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00239 6 2010635 2016275 Lapu6g00239 6 2010635 2016275 ECH
Lapu7g00111 7 1190481 1195344 Lapu6g00239 6 2010635 2016275 ECH
Lapu6g02380 6 23495846 23502003 Lapu6g00239 6 2010635 2016275 ECH
Lapu6g00239 6 2010635 2016275 Lapu6g02380 6 23495846 23502003 ECH
Lapu6g00239 6 2010635 2016275 Lapu6g00239 6 2010635 2016275 PCT