Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00741 ATGCGAAGAGCCAGAAATATGAGACCAAACATCGTTTCTGAGGCAGGGTTGCCTACTAGGATGAATCAATGGTGGGAAAGCATTCCATTTCTCACTTCTGCAGTGGTGGTTGTATGTGGAGTCATTTACTTGGTTTGTCTTTTGGTTGGATACGATTCCTTTGCCGAGGTTTGCTTCTTGCCATCTGCAGTTGTGGCACGGTTTCAAGTTTACAGGATTTATACTTCCATTCTTTTCCACGGTTCACTGCTTCATGTTCTCTTCAACATGATGGCTTTAGTTCCCTTGGGTTCTGAGCTGGAGAGGATCATGGGCTCAGTTCGCTTGCTGTATGTCATTGTTTTGTTGGCTTCAAGCAATGCCATATTCCATGTTCTCATAGCACTTCTGGTGGCACACAATCCCGTTCTTACATATGATTACCTTATGAATGAGTGTGCAATAGGCTTCTCAGGAGTTCTGTTCTCAATGATTGTTATAGAGACAAGCTTGAGTGGAGTTCAATCCAGGAGTGTTTTTGGATTGTTTAATGTGCCTGCCAAGTGGTATGCTTTCTTTTTGTTGGTAGTGTTCCAGCTTCTCATGCAAAATGTTTCACTACTTGGACACCTTTGTGGCATTTTATCTGGGTTTGCATATACATATGGATTGTTTAATTTCCTCATACCTGGAACCAGTTTTTATTCTTCTATTGAATCCTCCTCTTGGCTTTCATCATGTGTGAGACGTCCAAAATTTATCGTTTGCACTGGTGGAAATACTTCGGGTTATATTCCTACACATACGAGCCAAAATTCAACAAGTGGATTACTTTCTGGAAATATTTGGAGGAACCTATCTTCATTGATGCCTCAAAGGGAAGTGTCTACTCAGTCAACTGAGGACAGTAGGTTCCCTGGGAGGGGAAGGACCCTTGGTTCTGGTCAAGGTCAAACTGCTTCTCATCTTCATTCAGATTCAAATCTTCAAGAAAGACTTTTGGAGGATAATAGTCCCAATATTCCTTTAGTTTCATCCACTCCTAATAACACTCATCAGTTATCAGAAGGAAGGCATTCAGCTGATAATGTAGCTACAGCGGCTGGTGTTCCACAGCATCAGGGTGCGGTTGTTTCGGAAGAAGGGATTAAAAAACTTGTATCAATGGGCTTTGATAGGACGCAAGTAGAAGTGGCGCTTGCAGCTGCTGATGGTAATCTCAATGTTGCAGTGGAAATACTCATGAGCCAGCAGAGTTGA 1239 0.4237 MRRARNMRPNIVSEAGLPTRMNQWWESIPFLTSAVVVVCGVIYLVCLLVGYDSFAEVCFLPSAVVARFQVYRIYTSILFHGSLLHVLFNMMALVPLGSELERIMGSVRLLYVIVLLASSNAIFHVLIALLVAHNPVLTYDYLMNECAIGFSGVLFSMIVIETSLSGVQSRSVFGLFNVPAKWYAFFLLVVFQLLMQNVSLLGHLCGILSGFAYTYGLFNFLIPGTSFYSSIESSSWLSSCVRRPKFIVCTGGNTSGYIPTHTSQNSTSGLLSGNIWRNLSSLMPQREVSTQSTEDSRFPGRGRTLGSGQGQTASHLHSDSNLQERLLEDNSPNIPLVSSTPNNTHQLSEGRHSADNVATAAGVPQHQGAVVSEEGIKKLVSMGFDRTQVEVALAAADGNLNVAVEILMSQQS* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00741 412 SUPERFAMILY Rhomboid-like 26 220 IPR035952 -
Lapu6g00741 412 FunFam Rhomboid-like protein 15 22 219 - -
Lapu6g00741 412 SMART DUF1751_2 61 163 - -
Lapu6g00741 412 Pfam Rhomboid family 65 219 IPR022764 GO:0004252|GO:0016020
Lapu6g00741 412 MobiDBLite consensus disorder prediction 284 319 - -
Lapu6g00741 412 Gene3D - 345 412 - -
Lapu6g00741 412 Gene3D - 22 219 IPR035952 -
Lapu6g00741 412 SMART uba_6 372 409 IPR015940 -
Lapu6g00741 412 Pfam UBA/TS-N domain 373 407 IPR015940 -
Lapu6g00741 412 MobiDBLite consensus disorder prediction 305 319 - -
Lapu6g00741 412 CDD UBA_At3g58460_like 373 408 - -
Lapu6g00741 412 MobiDBLite consensus disorder prediction 284 298 - -
Lapu6g00741 412 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 370 410 IPR015940 -
Lapu6g00741 412 SUPERFAMILY UBA-like 364 411 IPR009060 GO:0005515
Lapu6g00741 412 MobiDBLite consensus disorder prediction 331 353 - -
Lapu6g00741 412 PANTHER DER1-LIKE PROTEIN, DERLIN 21 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00741 Lapu-Chr6 7782029 7792849 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00741 - - gmx:100805745 727.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00741 6 7782029 7792849 Lapu7g00157 7 1723396 1726016 ECH
Lapu6g00741 6 7782029 7792849 Lapu6g00741 6 7782029 7792849 ECH
Lapu6g00741 6 7782029 7792849 Lapu7g00157 7 1723396 1726016 PCT
Lapu7g01231 7 26120912 26149988 Lapu6g00741 6 7782029 7792849 PCT