Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01231 ATGAAGCAGCAGCCGCCGCAGTCACAGCAGCAGCCGCAGCAGCCGCAGCAGCAGGATGAGATGCAGGTTCTTCACGGTCCTCAACCTATGGAAGCAGAAAGCGCAAGCACAGTTGCTGCTCCCACAGTGGCTGCTCCAACAATGGATGATACACCATCTGCAAAATTCACTTGGACCATTGACAATTTTTCATCACTTCCTAAAAGAGTATTTTCTGACGCTTTCTGTGTAGGGGGCTTTAACTGGCGGGTTCTTATCTTTTCAAAGGGGAACAGTGTTGACCATCTATCAATGTATGTAGATGTTGCAGATGCAGCTAAATTGCCTTATGGTTGGAGTAAATATGCCCAATTCAGCTTGACTGTTGTTAATCAAATTCATAGTAAATTTTCAATAAGAAAAGAATCTCATCATCAGTTCAATGCGCGTGAGTGTGATTGGGGTTTCGTTAATTTCATGCCGCTTGCTCAATTGTATGATCCTGCTAGAGGTTATCTTGTGAATGATACATGTGTGGTAGAGGCTGACATTGCTGTGCGTAAAGACATGGATTGGTCATATGACTCGAAAAAGGAAACTGGTTATGTTGGACTAAAAAACCAAGGAGCTACTTGTTATATGAATTCTTTGCTTCAAACACTGTACCACATTTCTTATTTCCGAAAGGCTGTGTACCATATGCCCACAACTGAAAATGATATGCCATCAGGGAGCATACCTCTTGCATTACAGAGTTTGTTTTACAAATTGCAGTACAGTGACACTAGTGTAGCAACAAAAGAGTTAACCAAGTCTTTTGGATGGGATACATATGATTCTTTCATGCAGCATGATGTCCAAGAACTTAATAGGGTTCTTTGTGAGAAGCTAGAAGACAAAATGAAGGGAACTGTTGTGGAAGGCACTATACAGAAATTGTTTGAAGGCCACCATATGAACTATATTGAATGCATCAATGAGGATTATAAATCAACAAGAAAGGAGTCATTTTATGATCTTCAGCTTGATGTCAAAGGCTGTAAGGATGTATATGCTTCTTTTGATAAGTATGTGGAAGTGGAGCGGCTTGAGGGTGATAACAAATATCATGCCGAGCACCATGGTTTACAGGATGCTAGGAAGGGTGTATTGTTCATCGATTTCCCACCTGTTCTACAGCTTCAATTAAAACGGTTCGAGTATGATTTTATGCGAGACGCTATGGTAAAGATCAATGACCGCTATGAATTCCCTTTGCAACTTGATCTTGATAGGGATAATGGCAAGTATCTATCTCCTGAAGCAGACAGAAGTATTCGGAATCTTTATTCACTTCACAGTGTTTTGGTTCACAGTAGCGGGGTGAATGGTGGACACTACTATGTTTACATTAGGCCAACACTATCAAATCAGTGGTTTAAGTTTGACGATGAACGAGTAACAAAAGAAGATGCAAAGAGGGCTTTAGAAGAACAGTATGGTGGTGAAGAGGAGTTACCTCAAACTAATCCTGGGTTCAACAACTCTTCCTTTAAATTTACAAAATACTCAAATGCATATATGCTTGTCTATGTACGAGAAAGTGACAAGGATAAAATAATTTGTGATGTGGACGAGAAGGACATTGCTGAACACCTTAGAATGCGATTAAAGAGAGAACAAGAAGAAAAAGATCTGAAGAGGAAGGAGAAAGCTGAGGCTCACTTGTACACTATCATAAAGGTTGCTCGTGATGAAGATCTGCGTGAGCAGATTGGAAGTGATATATTCTTTGATCTTGTGGATCATGATAAAGTTCGAAGTTTTCGTATTCAAAAACAAATGCCTTTTGTTGTTTTCAAGGAAGAAGTTGCCAAAGAATTTGGTATACCCATCCAGTATCAGCGTTTTTGGTTGTGGGCAAAGCGCCAAAACAACACATACAGGCCAAATAGAGCACTCACACCTCAGGAAGAAGCTCAATCAGTTGGACTCTTAAGAGAAGTTTCCAATAAAGCAAATAATGCAGAGTTGAAGTTATTTTTGGAACTAGAAATGGGGAAGGATTTGCGGCCTATTCCTCCTCCTGAGAAGACAAAAGAGAATCTCTTGCTGTTCTTTAAACTTTATGAACCTTCAAATGAAAAGCTTAGGTATGTTGGACGGCTCTTTGTGATGTTCTGTGGGAAGCCAGTAGATATAGTGGTAAAACTAAATGAAATGGCTGGATATGCTCCTGATGAAGAAATTGACATGTTTGAGGAGATAAAGTTTGAACCTAGTGTCATGTGTGAACGTGTTGACAAAAAATCCACATTCCGTGAGAGTCAGCTTGAGGATGGTGATATTATTTGCTTCCAGAAGTCCCACAAAACTGGAAACGATGAGCGATATCGCTATCCAGATGTTCCTTCTTTCTTGGAGTATGTGCATAACCGTGTGGTTGTTCACTTTAGGATTTTGGAAAAACCAAAGGAGGATGAATTTAGTCTTGAGCTGTCAAAGCTTGACACCTATGACAATGTTGTTGAAGAAGTTGCTCAACATATTGGTTTGAATGATCCTTCTAAAATCAGACTCACATGTCATAACTGTTACTCCCAGCAACCTAAACCACAGTCTATAAAGTACAGAGCAATAGAACATTTGTCAGACATGCTGATTCACTATAATCAGACTTCTGATATTCTATACTATGAAGTATTGGATATACCTTTGCCAGAATTGCAGTGCCTAAAAACTCTTAAAATTGCATTCCATCATGCTACCAAGGATGAAGTGGTGATTCATACTATTAGATTGCCGAAACATTGTATTGTGTCAGATGTAATTAATGATCTTAAATCAAAGGTAGATTTATCACATCCAGATGCAGAACTTAGATTGCTTGAAGTTTTCTATCACAAGATCTATAAGGTTTTCCATGTCAATGAAAGGATTGAGAATATTAATGATCAATATTGGACACTTCGAGCAGAGGAGATTCCAGAGGAAGAGAAAAACCTTGGCCCTCATCATCGGTTGATCCATGTTTATCATTTCTTGAAAGACACTACTCAAAATCAGCAAGTTCAGAACTTCGGACATCCTTTTTTCTTAGCTATCCATGAGGGTGAGACATTAGCTGAAGTCAAATTGCGAATACAGAGCAAGTTGCAAGTTCCAGATGAGGAGTTTTCAAAGTGGAGATTTGCATTTTTGTCATTTGGTCGTCCTGAGTACCTTCAAGATTCAGATATTGTTTCCACTCGGTTCCAGAGAAGGGATATATATGGTGCGTGGGAGCAGTACCTCGGACTGGAACACACTGACAATACTCCTAAAAGATCGAATGCAGCCAATCAGAATCGTCAGCCATACGAGAAGCCAGTAAAAATCCATGTTTAG 3345 0.3958 MKQQPPQSQQQPQQPQQQDEMQVLHGPQPMEAESASTVAAPTVAAPTMDDTPSAKFTWTIDNFSSLPKRVFSDAFCVGGFNWRVLIFSKGNSVDHLSMYVDVADAAKLPYGWSKYAQFSLTVVNQIHSKFSIRKESHHQFNARECDWGFVNFMPLAQLYDPARGYLVNDTCVVEADIAVRKDMDWSYDSKKETGYVGLKNQGATCYMNSLLQTLYHISYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQKLFEGHHMNYIECINEDYKSTRKESFYDLQLDVKGCKDVYASFDKYVEVERLEGDNKYHAEHHGLQDARKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRDNGKYLSPEADRSIRNLYSLHSVLVHSSGVNGGHYYVYIRPTLSNQWFKFDDERVTKEDAKRALEEQYGGEEELPQTNPGFNNSSFKFTKYSNAYMLVYVRESDKDKIICDVDEKDIAEHLRMRLKREQEEKDLKRKEKAEAHLYTIIKVARDEDLREQIGSDIFFDLVDHDKVRSFRIQKQMPFVVFKEEVAKEFGIPIQYQRFWLWAKRQNNTYRPNRALTPQEEAQSVGLLREVSNKANNAELKLFLELEMGKDLRPIPPPEKTKENLLLFFKLYEPSNEKLRYVGRLFVMFCGKPVDIVVKLNEMAGYAPDEEIDMFEEIKFEPSVMCERVDKKSTFRESQLEDGDIICFQKSHKTGNDERYRYPDVPSFLEYVHNRVVVHFRILEKPKEDEFSLELSKLDTYDNVVEEVAQHIGLNDPSKIRLTCHNCYSQQPKPQSIKYRAIEHLSDMLIHYNQTSDILYYEVLDIPLPELQCLKTLKIAFHHATKDEVVIHTIRLPKHCIVSDVINDLKSKVDLSHPDAELRLLEVFYHKIYKVFHVNERIENINDQYWTLRAEEIPEEEKNLGPHHRLIHVYHFLKDTTQNQQVQNFGHPFFLAIHEGETLAEVKLRIQSKLQVPDEEFSKWRFAFLSFGRPEYLQDSDIVSTRFQRRDIYGAWEQYLGLEHTDNTPKRSNAANQNRQPYEKPVKIHV* 1115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01231 1114 MobiDBLite consensus disorder prediction 1089 1114 - -
Lapu7g01231 1114 MobiDBLite consensus disorder prediction 1089 1104 - -
Lapu7g01231 1114 CDD MATH 55 177 IPR002083 GO:0005515
Lapu7g01231 1114 Gene3D - 799 896 - -
Lapu7g01231 1114 ProSiteProfiles MATH/TRAF domain profile. 53 177 IPR002083 GO:0005515
Lapu7g01231 1114 FunFam Ubiquitin carboxyl-terminal hydrolase 13 799 896 - -
Lapu7g01231 1114 Pfam ICP0-binding domain of Ubiquitin-specific protease 7 621 873 IPR024729 -
Lapu7g01231 1114 Gene3D Cysteine proteinases 193 521 - -
Lapu7g01231 1114 SUPERFAMILY TRAF domain-like 50 182 - -
Lapu7g01231 1114 SUPERFAMILY Cysteine proteinases 191 545 IPR038765 -
Lapu7g01231 1114 MobiDBLite consensus disorder prediction 1 23 - -
Lapu7g01231 1114 FunFam Ubiquitin carboxyl-terminal hydrolase 13 193 521 - -
Lapu7g01231 1114 Pfam Ubiquitin carboxyl-terminal hydrolase 196 517 IPR001394 GO:0004843|GO:0016579
Lapu7g01231 1114 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 51 192 IPR008974 GO:0005515
Lapu7g01231 1114 Coils Coil 536 556 - -
Lapu7g01231 1114 FunFam Ubiquitin carboxyl-terminal hydrolase 13 51 192 - -
Lapu7g01231 1114 SMART math_3 55 158 IPR002083 GO:0005515
Lapu7g01231 1114 Gene3D - 681 798 - -
Lapu7g01231 1114 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 196 520 IPR028889 -
Lapu7g01231 1114 MobiDBLite consensus disorder prediction 1 36 - -
Lapu7g01231 1114 Pfam MATH domain 60 178 IPR002083 GO:0005515
Lapu7g01231 1114 CDD peptidase_C19C 194 522 - -
Lapu7g01231 1114 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 197 212 IPR018200 GO:0004843|GO:0006511
Lapu7g01231 1114 FunFam Ubiquitin carboxyl-terminal hydrolase 13 681 798 - -
Lapu7g01231 1114 Pfam Ubiquitin-specific protease C-terminal 883 1093 IPR029346 -
Lapu7g01231 1114 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 59 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01231 Lapu-Chr7 26120912 26149988 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01231 192 485 Miscellaneous Gene Families AT4G31670 25.705 1.55e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01231 K11838 - gmx:100337655 1971.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g01231 7 26120912 26149988 Lapu6g00741 6 7782029 7792849 PCT