Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00596 ATGGATCGCTTTTCTTCCAGTACTATTATGCCTGAAGCGTTCCAAGGGGCTAAAGATGACCTCACCACGCAGCTTTCATTGGTTTGGAATCAAATCAAAGCGCCATTGATTGTCCCGTTGCTGAGACTAGCTGTGTTTCTGTGCTTGATCATGTCGGTGATGATGTTCATTGAGAGGGTCTACATGGGAGTTGTCATCACTCTGGTGAAGTTGTTCGTGAGAAAGCCCGAGAAACGTTACAAATGGGAGCCAATGAAGGACGACATTGAGTTGGGAAACTCTTCTTACCCAATGGTCCTCGTTCAAGTCCCCATGTACAACGAGAGAGAGGTTTATCAGCTCTCAATTGGAGCTGCGTGTGGACTTTCTTGGCCCTCAGATAGGATCATCATACAAGTCCTTGATGACTCCACTGACCCAACAATCAAGGAGTTGGTGCAGCTTGAGTGTCAAAGATGGGCAAGCAAAGGGGTGAACATAAAGTACGAGGTTAGAGACAACAGGAATGGGTACAAAGCAGGGGCTCTGAAAGAAGGCATGAAGCGTAGCTACGTGAAACAGTGTGATTGTGTTGCAATCTTTGACGCTGATTTTCAACCAGAGCCTGATTTCTTGTGGCGCACCGTTCCATTCTTAGTGCACAATCCCGAACTAGCCCTCATTCAAGCGCGGTGGAAATTTGTGAATGCCGATGAATGTTTGATGACCAGAATGCAAGAGATGTCACTGGATTACCATTTTACTGTGGAACAAGAAGTGGGGTCTTCCACTTACGCCTTCTTTGGATTCAACGGGACTGCGGGAGTATGGAGAATTTCGGCGTTGAATGAGGCTGGTGGATGGAAGGATAGGACCACAGTGGAAGATATGGACTTGGCTGTGCGAGCCAGTCTCAAAGGATGGAAATTCTTATACTTGTCTGACTTGAAGGTTAAAAATGAATTGCCAAGCACTCTCAAGGCCTACCGTTACCAACAGCACCGTTGGTCTTGTGGTCCAGCCAATCTTTTTAGGAAAATGGTTATGGAGATCATAAACAACAAGAAAGTGTCATTGTGGAAGAAAATACATGTGATATACAGCTTCTTCTTTGTTCGGAAGGTCGTAGCACACATCAACACCTTTGTGTTCTACTGCATTGTATTGCCTGCAACAGTTTTGGTGCCTGAGGTTGTGGTCCCAAAGTGGGGAGCTGTCTATATCCCTTCTGTCATCACTATTCTAAATGCAGTTGGAACTCCAAGGTCACTCCATTTGCTGGTCTTCTGGATTCTCTTTGAAAATGTCATGTCTCTGCACCGAACAAAGGCAACGATTATCGGTCTACTAGAGGCTAGTCGAGTGAACGAATGGGTTGTCACTGAAAAACTTGGTGATGCTTTCAAGGCCAAAGCAGGAGGTAAAGCACCTAAAAAGCCTCGATTCAAGATCGGTGACAGGATTCACTTGTTAGAACTTGGTGTCGCATTCTACCTCTTCTTTTGTGGCTGCTATGATGTTATGTTCGGGAAAAACCACTTCTTCATCTTCCTCTTTATCCAATCTATCGCCTTCTTCATCATGGCATTTGGATACGTTGGCACCATTGTTCCCAACTCCTAG 1602 0.4544 MDRFSSSTIMPEAFQGAKDDLTTQLSLVWNQIKAPLIVPLLRLAVFLCLIMSVMMFIERVYMGVVITLVKLFVRKPEKRYKWEPMKDDIELGNSSYPMVLVQVPMYNEREVYQLSIGAACGLSWPSDRIIIQVLDDSTDPTIKELVQLECQRWASKGVNIKYEVRDNRNGYKAGALKEGMKRSYVKQCDCVAIFDADFQPEPDFLWRTVPFLVHNPELALIQARWKFVNADECLMTRMQEMSLDYHFTVEQEVGSSTYAFFGFNGTAGVWRISALNEAGGWKDRTTVEDMDLAVRASLKGWKFLYLSDLKVKNELPSTLKAYRYQQHRWSCGPANLFRKMVMEIINNKKVSLWKKIHVIYSFFFVRKVVAHINTFVFYCIVLPATVLVPEVVVPKWGAVYIPSVITILNAVGTPRSLHLLVFWILFENVMSLHRTKATIIGLLEASRVNEWVVTEKLGDAFKAKAGGKAPKKPRFKIGDRIHLLELGVAFYLFFCGCYDVMFGKNHFFIFLFIQSIAFFIMAFGYVGTIVPNS* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00596 533 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 89 313 IPR029044 -
Lapu6g00596 533 FunFam Glucomannan 4-beta-mannosyltransferase 9 88 316 - -
Lapu6g00596 533 SUPERFAMILY Nucleotide-diphospho-sugar transferases 94 373 IPR029044 -
Lapu6g00596 533 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 12 528 - -
Lapu6g00596 533 Pfam Glycosyltransferase like family 2 98 332 - -
Lapu6g00596 533 CDD CESA_CaSu_A2 97 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00596 Lapu-Chr6 6206353 6212209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00596 1 532 Miscellaneous Gene Families AT5G03760 80.113 0.0 928
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00596 K13680 - gmx:100782772 1045.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00596 6 6206353 6212209 Lapu11g00374 11 6799231 6805234 ECH
Lapu6g00596 6 6206353 6212209 Lapu6g00596 6 6206353 6212209 ECH
Lapu6g00596 6 6206353 6212209 Lapu7g01120 7 22609730 22616519 PCT