Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00366 ATGGTGTTGCAGAAGAGGTTATATTATATCCTTAACGGATGTCAGGTGCCAACCAAGCGCCGAGCTACTAGATCAGCTAGGAGGAACACTACATTTCAAAGAAGGTTGGAAGACAATCAAATGTGTGCATTTGACTTATTGGCCACCGTAGCTGACAATTTATTGCAAGAGAAACAGAATCCGACCACATGTACTGATAGATCATTGGAAAAAGATAGGGATGGATTTGTAAAAGAGAAGTGTCAGGATGCAAATAAACCATTAAAAATTGAGCTTTCTGATGGAGCAAGTTGTGACAGAAGATGTCAACATGAATTTGTTAAAGAAGGATGCCCAGATGCAAATAAACCATTACAAGCTGAGCTTTCAGACGAAGGAAGTAGTGATAGAAAAGGTTTCTCTATTATTTCTTCCCAAGTATACAATCAAAATTATTGTTTGAAGGAATTCCCCCATCATGAAATTGAAGGCCATTCATGCATTGCTTCTATAGTTACAAGTTCTAGTTGCTCAGAGAAGTTTGTTGCTGAAACACTGGTGGAAGGCCAAAATGGAATGGAAAATTTAGCTGGCAAAGTTGAATTAGGTTCCTCTGGAAGTCCAGAGAGTAGTGCTTGCAAGTTAGATGGTGATGTAAGTAAAGTAAAAGATGTTAAGTTTGGGAAGGTTCCCATTGATACTGGGATTGGATTGTGCTGTTCTGAGGATCACTTGGATGAAAAACCTCTAGAACTGATAAGTTCTTGTGGAAATGCCAAGTTGTCTGGCTATGATGACAGCATGCCTTATAGCTCATTGTCCAAAGGTTGTGACAATGCGCTAGTAGATAGTAGAGATGATGACGAAAACTTTTCTGGGTGTGCTCACCCTAGTACCAAAATAAGGTCCTCTAGACCAATTACTTGTATAGATGACAGAAAAATAAAGAAAAGATTGGCTTCAAAATATCATAAAGTTGCGCAAGAATTCAAGCATGATAAGTTATCTAATAGTGTTTTGGATGGAAATTTGAAGCCAGTTTACAGCAATAGGAAGAACTACTATAAAAGCCAAAGATCTCAAATGAACATTCCTTTCAAAAAGAGGAAGCTTTTTAAATGTAGCTCTGATACAAATTCTAACGGATATATCAGAAGTGGTGACACTTATTTTTCACTCAAGAATGAAACAAATCAAAGTGTTTCATACTCATCTTCTGGGATGAACAAAGATCATGGAACATCATCCTTGGGACACTCTGCATTACGATCTAGAGACTCTCATGTGAAGCTTAGGATCAAATCATTTAGAGTGCCCGAGCTTTTCATTGAGATTCCAGAAACTGCAACTATTGGGTCCTTAAAGAGGACAGTGATGGAGGCAGTGACTGCAGTACTTGGAGGTGGATTACGTGTGGGAGTGATTCTCCATGGAAAGAAGGTTAGAGATGACAGTAAAACTCTACTCCAGACTGGAATTTCTCATGATAAGCACCTGGATGCTTTGGGATTCGCCTTGGAGCCTAATTTTTCACAAAATCTACCACCTGCATGTGCAACTAGTTCTCTTCGCATTCCTAGTGCGGATATGCCTCAACCTTTTATAGGGTATCCTTCTAGTACCGCTGTAATTCATCAAAGGATTCAGGGCTTTTCTAACATGTTAGCTGAGCATCAGGCAACAGGTTTAGGTAACCTTGTCGAAAGTGATCATGATTCAGCACCTTCACCCATCAACACATCAGGTGAAAAGAAATTGTCAGATTCTAAAGAACTTATTACTGTTCCTGAAATGGGTAGGGAGGCACTAGCAGTGCTACCTGTGCATCAAAAGTCAAAGCGAACTGAGATCGCACAGCGTCGTATTCGAAGGCCATTTTCCGTTGCTGAAGTTGAAGCATTGGTTCAAGCAGTTGAGAAACTTGGAACTGGAAGGTGGCGTGATGTTAAGCTTCGTGCTTTTGATAATGCAAAGCATCGAACATACGTGGATTTGAAGGACAAATGGAAAACGCTGGTGCACACAGCAAGAATATCCCCTCAGCAAAGAAGGGGAGAGCCTGTTCCTCAAGAACTTTTGGATAGGGTCCTAACTGCCCACGCATATTGGTCCCAGCAGCAGACTAAGCAACAGCTCAAGCACCACTCAAAACCTTGCCTTCTGCTTTGA 2148 0.4064 MVLQKRLYYILNGCQVPTKRRATRSARRNTTFQRRLEDNQMCAFDLLATVADNLLQEKQNPTTCTDRSLEKDRDGFVKEKCQDANKPLKIELSDGASCDRRCQHEFVKEGCPDANKPLQAELSDEGSSDRKGFSIISSQVYNQNYCLKEFPHHEIEGHSCIASIVTSSSCSEKFVAETLVEGQNGMENLAGKVELGSSGSPESSACKLDGDVSKVKDVKFGKVPIDTGIGLCCSEDHLDEKPLELISSCGNAKLSGYDDSMPYSSLSKGCDNALVDSRDDDENFSGCAHPSTKIRSSRPITCIDDRKIKKRLASKYHKVAQEFKHDKLSNSVLDGNLKPVYSNRKNYYKSQRSQMNIPFKKRKLFKCSSDTNSNGYIRSGDTYFSLKNETNQSVSYSSSGMNKDHGTSSLGHSALRSRDSHVKLRIKSFRVPELFIEIPETATIGSLKRTVMEAVTAVLGGGLRVGVILHGKKVRDDSKTLLQTGISHDKHLDALGFALEPNFSQNLPPACATSSLRIPSADMPQPFIGYPSSTAVIHQRIQGFSNMLAEHQATGLGNLVESDHDSAPSPINTSGEKKLSDSKELITVPEMGREALAVLPVHQKSKRTEIAQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLTAHAYWSQQQTKQQLKHHSKPCLLL* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00366 715 CDD SANT_TRF 617 667 - -
Lapu5g00366 715 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 611 670 IPR017930 -
Lapu5g00366 715 Gene3D - 604 708 - -
Lapu5g00366 715 SUPERFAMILY Ubiquitin-like 417 507 IPR029071 -
Lapu5g00366 715 SMART sant 615 668 IPR001005 -
Lapu5g00366 715 FunFam Telomere repeat-binding protein 1 605 708 - -
Lapu5g00366 715 SUPERFAMILY Homeodomain-like 617 698 IPR009057 -
Lapu5g00366 715 MobiDBLite consensus disorder prediction 563 582 - -
Lapu5g00366 715 PANTHER TELOMERIC REPEAT BINDING PROTEIN 1 708 IPR031105 -
Lapu5g00366 715 ProSiteProfiles Myb-like domain profile. 611 666 IPR001005 -
Lapu5g00366 715 MobiDBLite consensus disorder prediction 394 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00366 Lapu-Chr5 3039151 3044979 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00366 - - gmx:100780881 1189.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00366 5 3039151 3044979 Lapu5g00366 5 3039151 3044979 ECH
Lapu1g01974 1 33196648 33200286 Lapu5g00366 5 3039151 3044979 ECH
Lapu5g00366 5 3039151 3044979 Lapu11g00583 11 9127649 9133167 PCT