Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00261 ATGTTTCAAGTTCCAGGGGTGCCAGGAATCCTCAACCCAGGAGGGCATCGTCATAACAAGATCAAAGGAACAGTGGTGTTGATGCGCAAGAATGTGTTGGACTTCAACACTGTCGCTGATCTCACCAAAGGAAACATTGGTGGAGTCATTGGAACTGGTCTCAACGTTGTTGGTTCAACAGTTGATGGCCTCACTGCTTTCTTAGGCCGAAGTGTCTCTCTCCAGCTCATTAGTGCCACTAAATCTGATGAAAATGGAAAAGGAAAAGTTGGTAAGGATGCGTTCTTGGAAGGGATCATCACGTCGTTACCAACTTTGGGAGCAGGGGAATCTGCATTCTATGTTCATTTTGAGTGGGACGAAAGCATGGGAATCCCTGGTGCATTTTACTTGAAGAATTACATGCAAGTTGAGTTTTTCCTCAAGAGTTTGACCCTTGAAGACGTTCCAAACCATGGAACCATTCGCTTTGTTTGCAACTCATGGGTTTACAACACTCAAGTTTACAAAAAAAGCGTGCGCATATTCTTTGCCAACCATAGTTATGTTCCAAGTGAGACACCAGCACCACTTGTGCATTATAGAGAAGAGGAATTGAAGAATTTAAGAGGAGATGGTACAGGAGAACGCAAAGAACATGAAAGGATCTATGATTATGATGTCTATAATGATTTGGGAAATCCAGACCTCCATGAAAATCTAACTCGTCCTATTCTTGGAGGGTCTGCCGCTCATCCCTACCCTCGTAGGGGAAGAACTGGACGATATCCAACAAGGAAAGATTCGAATTGTGAGAAGCCAGGCGAAGTTTATGTTCCAAGAGATGAAAACTTTGGTCACTTGAAATCTTCGGATTTCCTTGCATATGGAATAAAATCCTTGTCTCAGTTTGTCTTACCAGCGTTCGAATCTGTGTTCGATTATAACATGACCCCGAATGAGTTTGACAGCTTCCAAGATGTGCGTGACCTCTTTGAAGGTGGAATTAAGCTTCCTACAGATGTAATTAGAACAATTAGCCCCTTACCCGTGGTCAAAGAACTCTTTCGTACCGATGGTGAACAAGTTCTTAAGTTTCCAACACCTCACGTCATTGAAGTGAGTAAGTCAGCATGGATGACCGATGAAGAATTTGCCAGAGAGATGATTGCTGGAGTGAATCCTAACGTAATCCGTGGTCTTGAAGAGTTTCCTCCAAAAAGCAATCTGGATCCTGCAACCTATGGTGATCAAAACAGTAAGATAACAGCAGATGTGCTTGATCTAGATGGAAGCACAGTGGATGAGGCTCTTGCTAATCGGAGGTTATTTGTATTAGATTACCATGATATCTTCATGCCGTATATAAGGAGGATAAATCAGACTTATGCCAAAACTTATGCCACAAGGACTATCCTTTTCTTGAAAGAAAATGGAACTTTGAAGCCATTGGCCATCGAATTAAGTTTGCCACATCCTGGTGGGGACCAGTCAGGTGCTATCAGTCAAGTCATCTTACCCGCAAAAGAAGGCGTTGAAAGTACAATTTGGCTACTAGCCAAAGCTTATGTAGTTGTAAATGACTCTTGCTATCATCAACTCATGAGCCACTGGTTGAATACTCATGCAGTGATTGAGCCATTCATCATAGCAACACACCGGCACCTTAGTGCACTTCACCCAATTTATAAGCTTCTAACTCCTCATTATCGTGACACCATGAACATCAATGCACTAGCTAGACAGTCTCTAATTAATGCTGATGGCATAATAGAGAAATCCTTTTTGCCCTCAAAGTATTCTGTGGAGATGTCTTCAGCGGTTTATAAGAATTGGGTTTTCACTGATCAAGCACTGCCTGCAGATCTTATCAAGAGAGGAATGGCAGTTGAGGATCCATCTGCCCCACATGGACTTCGTCTCTTGATAGAAGACTACCCTTATGCTGTTGATGGACTAGAGATATGGACTGTGATTAAGTCATGGGTCCAAGAATATGTGGCCTTGTACTATGCAAAAGATGAAGATGTCAAATCAGATCCTGAACTCCAACATTGGTGGAAAGAAGCTGTGGAGAAAGGACATGCTGATTTGAAAGACGAGCCATGGTGGCCTAAGTTGCACACATCTGAGGAGCTTGTGGAAATCTGCACCGTTATCATATGGACTGGTTCAGCTCTCCATGCAGCCGTTAACTTTGGCCAATACCCTTATGGAGGTTTTATTCTGAACCGCCCAACTTTTACTAGAAGGTTGCTTCCTGAGCAAGGCACGCCAGAGTATGAAGAAATGGTGAAGAGCCATCAAAAGGCCTATTTGAGAACGATTACATCGAAGTTTCAGACTCTGGTTGACCTTTCAGTGATAGAGATGTTGTCAAGGCATGCCTCTGATGAGATCTACCTTGGCCAAAGGGAAAACCCACACTGGACCTCTGATTCCAAAGCGTTGCAGGCCTTTCAAAAGTTTGGAAACAAGCTGAAGGAAATTGAGGAAAAACTCGCAAGTAAGAATAGTGATGAGAAACTGAGAAATCGATTTGGACCCGTGGAATTGCCATACACTTTGCTTCATCCTACCAGTAAGGAAGGGTTGACTTTTAGAGGAATTCCTAATAGCATTTCCATCTGA 2610 0.4299 MFQVPGVPGILNPGGHRHNKIKGTVVLMRKNVLDFNTVADLTKGNIGGVIGTGLNVVGSTVDGLTAFLGRSVSLQLISATKSDENGKGKVGKDAFLEGIITSLPTLGAGESAFYVHFEWDESMGIPGAFYLKNYMQVEFFLKSLTLEDVPNHGTIRFVCNSWVYNTQVYKKSVRIFFANHSYVPSETPAPLVHYREEELKNLRGDGTGERKEHERIYDYDVYNDLGNPDLHENLTRPILGGSAAHPYPRRGRTGRYPTRKDSNCEKPGEVYVPRDENFGHLKSSDFLAYGIKSLSQFVLPAFESVFDYNMTPNEFDSFQDVRDLFEGGIKLPTDVIRTISPLPVVKELFRTDGEQVLKFPTPHVIEVSKSAWMTDEEFAREMIAGVNPNVIRGLEEFPPKSNLDPATYGDQNSKITADVLDLDGSTVDEALANRRLFVLDYHDIFMPYIRRINQTYAKTYATRTILFLKENGTLKPLAIELSLPHPGGDQSGAISQVILPAKEGVESTIWLLAKAYVVVNDSCYHQLMSHWLNTHAVIEPFIIATHRHLSALHPIYKLLTPHYRDTMNINALARQSLINADGIIEKSFLPSKYSVEMSSAVYKNWVFTDQALPADLIKRGMAVEDPSAPHGLRLLIEDYPYAVDGLEIWTVIKSWVQEYVALYYAKDEDVKSDPELQHWWKEAVEKGHADLKDEPWWPKLHTSEELVEICTVIIWTGSALHAAVNFGQYPYGGFILNRPTFTRRLLPEQGTPEYEEMVKSHQKAYLRTITSKFQTLVDLSVIEMLSRHASDEIYLGQRENPHWTSDSKALQAFQKFGNKLKEIEEKLASKNSDEKLRNRFGPVELPYTLLHPTSKEGLTFRGIPNSISI* 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00261 869 ProSitePatterns Lipoxygenases iron-binding region signature 2. 552 562 IPR020834 GO:0016702|GO:0046872
Lapu5g00261 869 ProSitePatterns Lipoxygenases iron-binding region signature 1. 525 539 IPR020833 GO:0016702|GO:0046872
Lapu5g00261 869 SUPERFAMILY Lipoxigenase 184 869 IPR036226 -
Lapu5g00261 869 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 19 182 IPR036392 GO:0005515
Lapu5g00261 869 FunFam Lipoxygenase 371 502 - -
Lapu5g00261 869 Gene3D PLAT/LH2 domain 14 182 - -
Lapu5g00261 869 PANTHER LIPOXYGENASE 19 869 IPR000907 GO:0016702|GO:0034440|GO:0046872
Lapu5g00261 869 Gene3D - 503 868 - -
Lapu5g00261 869 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 181 869 IPR013819 GO:0016702|GO:0046872
Lapu5g00261 869 Pfam Lipoxygenase 191 852 IPR013819 GO:0016702|GO:0046872
Lapu5g00261 869 Gene3D - 371 502 - -
Lapu5g00261 869 FunFam Lipoxygenase 504 868 - -
Lapu5g00261 869 Gene3D - 183 281 - -
Lapu5g00261 869 PRINTS Plant lipoxygenase signature 147 165 IPR001246 GO:0016491
Lapu5g00261 869 PRINTS Plant lipoxygenase signature 213 229 IPR001246 GO:0016491
Lapu5g00261 869 PRINTS Plant lipoxygenase signature 357 373 IPR001246 GO:0016491
Lapu5g00261 869 PRINTS Plant lipoxygenase signature 246 265 IPR001246 GO:0016491
Lapu5g00261 869 PRINTS Plant lipoxygenase signature 174 195 IPR001246 GO:0016491
Lapu5g00261 869 PRINTS Plant lipoxygenase signature 312 333 IPR001246 GO:0016491
Lapu5g00261 869 PRINTS Plant lipoxygenase signature 782 796 IPR001246 GO:0016491
Lapu5g00261 869 PRINTS Plant lipoxygenase signature 396 415 IPR001246 GO:0016491
Lapu5g00261 869 PRINTS Plant lipoxygenase signature 460 484 IPR001246 GO:0016491
Lapu5g00261 869 MobiDBLite consensus disorder prediction 241 263 - -
Lapu5g00261 869 Gene3D - 282 370 IPR027433 -
Lapu5g00261 869 PRINTS Lipoxygenase signature 525 542 IPR013819 GO:0016702|GO:0046872
Lapu5g00261 869 PRINTS Lipoxygenase signature 545 565 IPR013819 GO:0016702|GO:0046872
Lapu5g00261 869 PRINTS Lipoxygenase signature 507 524 IPR013819 GO:0016702|GO:0046872
Lapu5g00261 869 FunFam Lipoxygenase 183 281 - -
Lapu5g00261 869 ProSiteProfiles PLAT domain profile. 52 177 IPR001024 GO:0005515
Lapu5g00261 869 CDD PLAT_LH2 20 179 IPR042057 -
Lapu5g00261 869 SMART LH2_4 19 179 IPR001024 GO:0005515
Lapu5g00261 869 Pfam PLAT/LH2 domain 85 177 IPR001024 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00261 Lapu-Chr5 2144966 2148837 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00261 10 869 Acyl Lipid Metabolism Gene Families AT1G55020 57.583 0.0 1020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00261 K15718 - gmx:547774 1557.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00261 5 2144966 2148837 Lapu10g00437 10 6787138 6789916 PCT
Lapu10g00438 10 6791173 6791685 Lapu5g00261 5 2144966 2148837 PCT