Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00437 ATGAAAGCGTTGTTCAACAGAAGCAAGAAGGTGAAGGGGAGGGTGGTGTTGATGCGCAAGAACGTGTTCGACACAGAAAACATAACCAGTCTGAGAGGGATTGTTGACACTAGCAGATGCATAGTTGGTTCAACATTCATTGATAGTCTCAGTGCCTTCTCAGGTCGATGTGTGTCTCTCCGCTTGATTAGTGCTACCAAGGTTGCTGGAAATGGAAGTGGGAAAGTTGGAAAGAAGACTTATTTGGAAGGTGTTCTAACCACGGTACCAACCTTGGGAGTGGATGAATGTGCATTTGATGTTCATTTTGATTGGGACATCGAAGACATGGGAATTCCTGGAGCATTTATAATAAAAAATTATCTGCTAGTTGAGTTCTTTCTCACATATGTTCCAAGTGAAACACCAGTACCACTAGTGAGCTACAGAGAAGCAGAATTGCAGACTCTGAAAGGAAATGGAAAAGGGAAACTCAGACAATGGCATAGAGTTTACGATTACGACGTTTACAATGATTTAGGTAATCCTGACATTGATGAAGACTTAGCTCGCCCAGTTCTTGGAGGATCTGTCAGTTATCCCTACCCTCGTAGAGGAAGAACCGGAAGAAAACACACAAAAAAAGATTCTAACAGTGAGAAACGAAGCAGTAAAATTTATGTTCCAAGAGATGAACATTTTGGTCACTTAAAATCGTCTGACTTCCTTAGTTTTGGGATAAAATCTTTATCTCGAAACATCTGGCCTCTCCTCAAACCTCTACTTGATTCAAATATCTCAAATGATGAGTTTGATAGCTTTGATGAAGTACATGACCTCTCTGAGGGTGGAGTTAAGCTGCCTATGGATACTCTCAGAAAAATTAGCCCTTTACCTTTGCTACAAGAGATCTTCCGCACTGACGGTGAAAATGTCCTCAAGTTTTCAGTACCCCATGTAATTAGAGTTAGTAAATCTGCATGGATGACTGATGAAGAATTTGCAAGAGAGATGCTTGCCGGTGTAAATCCTTGCACGATTCGCCGTCTACAAGAATTCCCACCACAAAGCAAGTTGGATCGCTCAGTCTATGGTGATCAAACAAGTAAAATGACTGAACAACATTTGGAGATTAACCTCGAAGGGCTCACAGCAATTAAGTGTCATAGATTATTCATACTAGATCACCATGATGTTTTTATGCCATTTTTGAGAAGGATAAATAAATCTACATCATCTAAGGCTTATGCCACGAGAACAATCCTTTTCTTGAAAGATGATGGGACCTTAAAGCCATTGGCCATTGAATTAAGTTTGCCACATCCAAGTCAACAACTAGGTGCCTATAGTAAAGTGGTCTTGCCTGCAAAGCATGGAGTTGAAAGTACAATTTGGCTATTAGCCAAGGCTCACGTTATTGTGAATGATTCCTGTTATCATCAGCTCATAAGCCACTGGTCTGACTGA 1446 0.4073 MKALFNRSKKVKGRVVLMRKNVFDTENITSLRGIVDTSRCIVGSTFIDSLSAFSGRCVSLRLISATKVAGNGSGKVGKKTYLEGVLTTVPTLGVDECAFDVHFDWDIEDMGIPGAFIIKNYLLVEFFLTYVPSETPVPLVSYREAELQTLKGNGKGKLRQWHRVYDYDVYNDLGNPDIDEDLARPVLGGSVSYPYPRRGRTGRKHTKKDSNSEKRSSKIYVPRDEHFGHLKSSDFLSFGIKSLSRNIWPLLKPLLDSNISNDEFDSFDEVHDLSEGGVKLPMDTLRKISPLPLLQEIFRTDGENVLKFSVPHVIRVSKSAWMTDEEFAREMLAGVNPCTIRRLQEFPPQSKLDRSVYGDQTSKMTEQHLEINLEGLTAIKCHRLFILDHHDVFMPFLRRINKSTSSKAYATRTILFLKDDGTLKPLAIELSLPHPSQQLGAYSKVVLPAKHGVESTIWLLAKAHVIVNDSCYHQLISHWSD* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00437 481 PRINTS Plant lipoxygenase signature 261 282 IPR001246 GO:0016491
Lapu10g00437 481 PRINTS Plant lipoxygenase signature 194 213 IPR001246 GO:0016491
Lapu10g00437 481 PRINTS Plant lipoxygenase signature 122 143 IPR001246 GO:0016491
Lapu10g00437 481 PRINTS Plant lipoxygenase signature 306 322 IPR001246 GO:0016491
Lapu10g00437 481 PRINTS Plant lipoxygenase signature 345 364 IPR001246 GO:0016491
Lapu10g00437 481 PRINTS Plant lipoxygenase signature 161 177 IPR001246 GO:0016491
Lapu10g00437 481 PRINTS Plant lipoxygenase signature 409 433 IPR001246 GO:0016491
Lapu10g00437 481 SMART LH2_4 9 153 IPR001024 GO:0005515
Lapu10g00437 481 FunFam Lipoxygenase 320 450 - -
Lapu10g00437 481 Pfam Lipoxygenase 139 480 IPR013819 GO:0016702|GO:0046872
Lapu10g00437 481 Gene3D - 320 446 - -
Lapu10g00437 481 PRINTS Lipoxygenase signature 455 472 IPR013819 GO:0016702|GO:0046872
Lapu10g00437 481 PRINTS Lipoxygenase signature 473 481 IPR013819 GO:0016702|GO:0046872
Lapu10g00437 481 FunFam Lipoxygenase 131 230 - -
Lapu10g00437 481 Gene3D - 134 230 - -
Lapu10g00437 481 Gene3D PLAT/LH2 domain 1 133 - -
Lapu10g00437 481 SUPERFAMILY Lipoxigenase 131 479 IPR036226 -
Lapu10g00437 481 Gene3D - 231 319 IPR027433 -
Lapu10g00437 481 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 129 481 IPR013819 GO:0016702|GO:0046872
Lapu10g00437 481 MobiDBLite consensus disorder prediction 189 218 - -
Lapu10g00437 481 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 9 130 IPR036392 GO:0005515
Lapu10g00437 481 Gene3D - 447 481 - -
Lapu10g00437 481 PANTHER LIPOXYGENASE 9 479 IPR000907 GO:0016702|GO:0034440|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00437 Lapu-Chr10 6787138 6789916 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00437 8 479 Acyl Lipid Metabolism Gene Families AT1G55020 49.143 2.45e-155 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00437 K15718 - gmx:547694 702.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00261 5 2144966 2148837 Lapu10g00437 10 6787138 6789916 PCT