Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00536 ATGGAAAATAATACAGGAGTTATTGCAAAGAGAGTGTGGAACATAATACGTGTGGCTTTCTTCATGTTGAGAAAAGGCATATCAAAGGGCAAGCCAATGATGCACCTTAACGTCATGCTCAAACGCCGAAGCAAACTCGCCGGCAAAGCCATCGCCAACGTCATGTTCCACCACCACCACCACCACCATGCCGGAGCCTCCGGCAACGACCTCCAGTTCTCAGCCGCCAGGGAGTACGAGTTTAGCTGCAGCAACACTCCCAACAACTTCTTCGCCACCATGGGCAACAGCAACAAGCGCCACCGCCACAACCCTTTCTTCACGTGCGCTCACGCGCCGCCCACCTTCGATGACGACGCCGTGACAGTTAATGTTGTTAAGGGCGTGTTGCAGATGCTGAACAATGAGGCGGTGGCGGAGGCGTCGCCGGCCGCCGCACTTTGTAGCCCTGTGGTGAGGCAGTTTAGGGTTACGGACTCTCCGTTCCCACTTCGTGAGTACGAGGACGACAAGGACAACCAAGTGGACAAGGCTGCGGAAGAGTTCATAAAGAGGTTTTACAAAGAGCTGAAGAAGCAAACTTGA 585 0.5368 MENNTGVIAKRVWNIIRVAFFMLRKGISKGKPMMHLNVMLKRRSKLAGKAIANVMFHHHHHHHAGASGNDLQFSAAREYEFSCSNTPNNFFATMGNSNKRHRHNPFFTCAHAPPTFDDDAVTVNVVKGVLQMLNNEAVAEASPAAALCSPVVRQFRVTDSPFPLREYEDDKDNQVDKAAEEFIKRFYKELKKQT* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00536 194 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 6 193 - -
Lapu10g00536 194 Coils Coil 192 194 - -
Lapu10g00536 194 Pfam Cotton fibre expressed protein 172 193 IPR008480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00536 Lapu-Chr10 7685608 7686907 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00536 - - gmx:100801941 279.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03772 3 61161779 61163054 Lapu10g00536 10 7685608 7686907 ECH
Lapu4g00083 4 770577 771393 Lapu10g00536 10 7685608 7686907 ECH
Lapu10g00536 10 7685608 7686907 Lapu10g00536 10 7685608 7686907 ECH