Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00247 ATGTCATCTGCTGGTGTCACCATCCTTAGCCCTGTTCCAAGGGAACTATTGTTGTCCCCTGATGGATACCATACCCCACTGCACTTGTCATTGGATCATGAGTTTATTTTCATATATCTCTCCCATTCTGGATCTTTGACTCCGATGAGAGTCCTTCCATACGATACCATTGAGTCAGTGAAACTCAAAATCCAAAAGGCCGAGGGGCTTCCTTCATTGACAAACAAACAAAAGTTGGTTTGTGATGGACGGGAGCTAGCGCGGAGCAGTTCCCTGCTGAAGGACTATGGGGTTACTGAAGGAAATGTTTTGCATTTGGTGATTAGGCTGTCGGATCTCCAGACCATCAGTGTGAGAACCTCTTCTGGAAAAGACTTTACTTTTCAGGTGGAGAGATGCAGAGATGTTGGGTATGTTAAGCAGCAGATTGCAAAAAAGGAGAAGCGCTTTGCTGATCCTGAACAGCAGGAGGTTGTGTGTAACGGGGAGCTGCTTGAGGATCAGAGGGTTATTGATGATATCTGTAGTAAATATAACGATGCAGTGATTCATCTTTTTGTTAGAGTGAAATATGCAGAAGTTAGGACAGGACAAGATGAGTTGTCCATCAAGGCAAAGGAGTTGAATGGTACAAAAGATTACGATGTTAGTGAAACTAATTGTAGGAGAGAACATGATGTTAGTAAAGAAGATGCAGGAAGGGAGGATGGAGCCACCGAGTCAATTGTGCCGAGGAAGGCTCTTGATAGTGATATTCTTTTGGAGCCTGTTCTTGTTAATAAGAAAATTGAATTAGCTTCGGAGATTTGGAATATGATAAACTTTACATATGAAGGACTAAACAGTGGAAATTATCCAATCAGATCTGCAGAGGGTACAGGGGGAGCTTACTTTATGCTTGATTCAACCGGGCAAAAGTATGTATCTGTTTTTAAGCCCATTGATGAAGAGCCAATGGCGGTGAATAACCCTAGAGGCTTACCTTTCTCAGAAGATGGTGAAGGCTTAAAGAAGGGTACGAGAGTTGGTCAGGGAGCATTCAGGGAAGTTGCAGCTTATATTTTGGACCATCCAATGAGTGGCCATCGATCATTATTTGGTGATCAGAAGGGCTTTGCTGGGGTTCCCCCGACTGTTTTGGTTAAGTGCTTGCATGAAGGATTTAACCATCCTGGGGACTTGACTACTAAGCTTGGCTCCTTGCAAATGTTCATAGAGAATAATGGAAGTTGCGAGGATATGGGCCCTGGGGCTTTTCCAGTGAAGGAAGTGCATAAAATTACTGTTCTGGACATGAGACTCGCAAATGCAGATAGGCATGCTGGTAATATTTTGATTGGCAAAGAGGAGGAAAATGATCAGGCTGTTTTGATTCCAATTGATCATGGATACTGCTTGCCCACTAGTTTTGAAGATTGTACCTTTGAATGGCTTTATTGGCCCCAAGCTCGACAGCCATACTCCCCAGAGATCATTGACTATATAAGGTCACTGAATGCTGATGAGGATATTGCCCTTTTGAAGTTTCATGGATGGGATCTGCCAGTTGAATGCGCTCGCACTCTTCAAATCTCAACCATGCTTCTGAAGAAAGGAGTGGAGAGAGGGATGACCCCCTTTGCCATTGGAAGCCTTATGTGCAGGGAATCCTTGAACAAGGAGTCCGTGATTGAGGGAATTGTAAAGGCAGCTCTGGATTCTGTTCTTCCTGGCACAAGTGAAGAAACATTTCTGGATGCTGTTTCTGAAATCATGGACCAGCACCTTGACGAGATTCTGTCATAG 1785 0.4387 MSSAGVTILSPVPRELLLSPDGYHTPLHLSLDHEFIFIYLSHSGSLTPMRVLPYDTIESVKLKIQKAEGLPSLTNKQKLVCDGRELARSSSLLKDYGVTEGNVLHLVIRLSDLQTISVRTSSGKDFTFQVERCRDVGYVKQQIAKKEKRFADPEQQEVVCNGELLEDQRVIDDICSKYNDAVIHLFVRVKYAEVRTGQDELSIKAKELNGTKDYDVSETNCRREHDVSKEDAGREDGATESIVPRKALDSDILLEPVLVNKKIELASEIWNMINFTYEGLNSGNYPIRSAEGTGGAYFMLDSTGQKYVSVFKPIDEEPMAVNNPRGLPFSEDGEGLKKGTRVGQGAFREVAAYILDHPMSGHRSLFGDQKGFAGVPPTVLVKCLHEGFNHPGDLTTKLGSLQMFIENNGSCEDMGPGAFPVKEVHKITVLDMRLANADRHAGNILIGKEEENDQAVLIPIDHGYCLPTSFEDCTFEWLYWPQARQPYSPEIIDYIRSLNADEDIALLKFHGWDLPVECARTLQISTMLLKKGVERGMTPFAIGSLMCRESLNKESVIEGIVKAALDSVLPGTSEETFLDAVSEIMDQHLDEILS* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00247 594 Pfam Phosphatidylinositol 3- and 4-kinase 292 541 IPR000403 -
Lapu10g00247 594 Gene3D - 35 113 - -
Lapu10g00247 594 SMART ubq_7 114 188 IPR000626 GO:0005515
Lapu10g00247 594 SMART ubq_7 36 109 IPR000626 GO:0005515
Lapu10g00247 594 SUPERFAMILY Ubiquitin-like 26 110 IPR029071 -
Lapu10g00247 594 Gene3D - 114 193 - -
Lapu10g00247 594 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 283 576 IPR000403 -
Lapu10g00247 594 SUPERFAMILY Protein kinase-like (PK-like) 430 592 IPR011009 -
Lapu10g00247 594 ProSiteProfiles Ubiquitin domain profile. 114 173 IPR000626 GO:0005515
Lapu10g00247 594 ProSiteProfiles Ubiquitin domain profile. 36 109 IPR000626 GO:0005515
Lapu10g00247 594 CDD Ubl_ubiquitin_like 116 186 - -
Lapu10g00247 594 SUPERFAMILY Ubiquitin-like 109 189 IPR029071 -
Lapu10g00247 594 Pfam Ubiquitin family 42 110 IPR000626 GO:0005515
Lapu10g00247 594 Pfam Ubiquitin family 116 189 IPR000626 GO:0005515
Lapu10g00247 594 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 45 567 IPR044571 -
Lapu10g00247 594 MobiDBLite consensus disorder prediction 216 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00247 Lapu-Chr10 4514413 4517766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00247 1 591 Acyl Lipid Metabolism Gene Families AT5G24240 54.362 0.0 621
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00247 - - gmx:100815111 1104.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00247 10 4514413 4517766 Lapu9g01349 9 27615082 27619152 ECH
Lapu10g00247 10 4514413 4517766 Lapu10g00247 10 4514413 4517766 ECH
Lapu6g01932 6 19208448 19211540 Lapu10g00247 10 4514413 4517766 PCT