Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01349 ATGGCTTGTGTGGCACTTCGTCCCGTGCGTGAAGAATCTTTCAACACCCGTGGTGAATTCACTGGTTGTTTCAGTCCTCTTTGGAGGGACTCAATTTTGATTTACCTAACTGTTGGTGGATCCGTGATTCCTATGCGTATTATGGAGACAGATTCAATTGCTTCAGTGAAGCTGAGAATTCAAACCTTCAAAGGATTTTTTGTAAAAAAACAGAAACTAGTTTTTGAAGGGAAGGAGTTGGCTCGTAACAGATCTTGTATCCGTGATTATGGGGTTGGTGATGGGAATGTTCTGCACCTGGTGCTGAGACTTTCTGATCTCAAAGCTATTACAGTTAGGACTGTGTGTGGAAAGGAGTTTGGGCTTTATGTTGAGAAGTGTAGGAATGTGGGTTATGTGAAGCAACAGATTGCAAGAAAAGGGCAAGGGTTAGTGGATCTCAAGGATCAAGAACTGATATGTGAAGGTGAGGCACTTGAAGACCAGAGACTTATTGAGGATATCTGCAAGGACAATGATGCTGTAATTCATTTTTTGGTCAGAATATCAGATGCCAAGGTAAGGACTAAACCAGTTGAGAAGGATTTTGAATTATCAATTGAGGCATCATATGCACATAGTCTGCTGGTGCCTAATTTACATTCAGACCAGTTAGGGCCAGTCTCTGTAACAAATGAGATCCTGGAGAGGAATCAATTATCGAGGGATTATCTTGTGGAACCAATTATTATGAATTCCAACATGAAAATTCCACCAGTGATTCACAAGATAATTAAGATCACTTCAGAGGGGTTAGAAAATGGCTGTAAACCAATTCAATCTCCAGAGGGATCAGGTGGAGCTTATCTCATGCAAGATTCATCTGGCTTGAAGTATATTTCTGTTTTCAAACCCATTGATGAAGAGCCCATGGCAATTAATAACCCTCGAGGCCTACCTATTTCGGAGGATGGCGAAGGGCTAAAGAAAGGTACAAGGGTAGGGCAAGGTGCTTTGAGAGAAGTTGCAGCGTACATTTTGGATCATCCTAGGAAAGGACCTCGCTCATATCATAGCAATGAGGAACCAGGATTTGCTGGAGTTCCACCTACGGTCATGGTCAAATGCCTGCATAAAGGATTTCATAACGTTGAAGGTTATCAGAATGTTTCAGGCAATGCTAAAATAGGATCGCTTCAGATGTTTATGAAGAATATTGGAAGTTGTGAAGACATGGGCCCTAGTGCTTTTCCGGTGGAAGAGGTACACAAGATCTCTGTATTGGATATCAGGTTGGTAAATGCTGATAGGCATGCTGGCAACATTTTGATTGCCAAGGATGGTGAAGACGGTCCTACAATCCTCATTCCAATTGATCATGGCTATTGCTTGCCTGAGAGCTATGAAGACTGCACTTTTGACTGGTTATACTGGCCACAAGCTAAGGAACCTTACTCTGCAGACACCATTGATTACATAAAATCTCTGGATGCTGAAGAAGATATAAAGCTTTTGAAGCTTCATGGATGGGATCTTCCTCCTAAGTGTGCCCAGATCCTTAGTATATCAACCATGCTTCTTCAGAAAGGTGCAGAGAGAGGACTCACTCCTTTTGCCATAGGAAGCATCATGTGTAGACAAACACTGAAGAAAAAATCTGTCATTGAACAGATTGTGCAGGAAGCTGAGGAAGCTGCATTTCCTGGAACAAGTGAAGCAGCATTTCTTGATCTCGTTTCAGTGATCATGGATAGTTATTTGGATGAACTATTCCCGTGA 1758 0.4204 MACVALRPVREESFNTRGEFTGCFSPLWRDSILIYLTVGGSVIPMRIMETDSIASVKLRIQTFKGFFVKKQKLVFEGKELARNRSCIRDYGVGDGNVLHLVLRLSDLKAITVRTVCGKEFGLYVEKCRNVGYVKQQIARKGQGLVDLKDQELICEGEALEDQRLIEDICKDNDAVIHFLVRISDAKVRTKPVEKDFELSIEASYAHSLLVPNLHSDQLGPVSVTNEILERNQLSRDYLVEPIIMNSNMKIPPVIHKIIKITSEGLENGCKPIQSPEGSGGAYLMQDSSGLKYISVFKPIDEEPMAINNPRGLPISEDGEGLKKGTRVGQGALREVAAYILDHPRKGPRSYHSNEEPGFAGVPPTVMVKCLHKGFHNVEGYQNVSGNAKIGSLQMFMKNIGSCEDMGPSAFPVEEVHKISVLDIRLVNADRHAGNILIAKDGEDGPTILIPIDHGYCLPESYEDCTFDWLYWPQAKEPYSADTIDYIKSLDAEEDIKLLKLHGWDLPPKCAQILSISTMLLQKGAERGLTPFAIGSIMCRQTLKKKSVIEQIVQEAEEAAFPGTSEAAFLDLVSVIMDSYLDELFP* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01349 585 ProSiteProfiles Ubiquitin domain profile. 108 185 IPR000626 GO:0005515
Lapu9g01349 585 Pfam Ubiquitin family 38 104 IPR000626 GO:0005515
Lapu9g01349 585 Pfam Ubiquitin family 110 181 IPR000626 GO:0005515
Lapu9g01349 585 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 41 558 IPR044571 -
Lapu9g01349 585 Gene3D - 108 198 - -
Lapu9g01349 585 Gene3D - 30 107 - -
Lapu9g01349 585 SUPERFAMILY Ubiquitin-like 37 105 IPR029071 -
Lapu9g01349 585 CDD Ubl_ubiquitin_like 110 177 - -
Lapu9g01349 585 SUPERFAMILY Ubiquitin-like 105 183 IPR029071 -
Lapu9g01349 585 FunFam Phosphatidylinositol 4-kinase gamma 4 29 108 - -
Lapu9g01349 585 Pfam Phosphatidylinositol 3- and 4-kinase 277 532 IPR000403 -
Lapu9g01349 585 ProSiteProfiles Ubiquitin domain profile. 30 103 IPR000626 GO:0005515
Lapu9g01349 585 SMART ubq_7 32 103 IPR000626 GO:0005515
Lapu9g01349 585 SMART ubq_7 108 181 IPR000626 GO:0005515
Lapu9g01349 585 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 268 567 IPR000403 -
Lapu9g01349 585 SUPERFAMILY Protein kinase-like (PK-like) 419 583 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01349 Lapu-Chr9 27615082 27619152 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01349 1 582 Acyl Lipid Metabolism Gene Families AT5G24240 60.034 0.0 707
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01349 - - gmx:100812724 1034.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00247 10 4514413 4517766 Lapu9g01349 9 27615082 27619152 ECH
Lapu9g01349 9 27615082 27619152 Lapu9g01349 9 27615082 27619152 ECH