Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1285 ATGGCAGAAGATCCACAAGATATAGCTGCTAGAGAACGTATCTTCAAGCATTTCGACGCCAATGGTGATGGTCAAATATCTTCATCAGAGCTTGGTGATGCACTAAATGCACTTGGATCAGTGACTGTGGAGGATGTGAAGAAAATGATGGATGAGATTGACACTGATGGGGATGGTTTCATTTCATATGAGGAGTTCACAGAATTTGCTAGAGCAAACCGTGGTTTAGTTAGGGATGCTGCCAAGATTTTTTAA 255 0.4157 MAEDPQDIAARERIFKHFDANGDGQISSSELGDALNALGSVTVEDVKKMMDEIDTDGDGFISYEEFTEFARANRGLVRDAAKIF* 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1285 84 Gene3D - 2 84 - -
Lan9g1285 84 SMART efh_1 10 38 IPR002048 GO:0005509
Lan9g1285 84 SMART efh_1 45 73 IPR002048 GO:0005509
Lan9g1285 84 ProSitePatterns EF-hand calcium-binding domain. 54 66 IPR018247 -
Lan9g1285 84 ProSiteProfiles EF-hand calcium-binding domain profile. 6 40 IPR002048 GO:0005509
Lan9g1285 84 PANTHER TROPONIN 1 84 - -
Lan9g1285 84 SUPERFAMILY EF-hand 10 70 IPR011992 -
Lan9g1285 84 Pfam EF-hand domain pair 13 71 IPR002048 GO:0005509
Lan9g1285 84 CDD EFh 12 71 IPR002048 GO:0005509
Lan9g1285 84 PANTHER POLCALCIN NIC T 1 1 84 - -
Lan9g1285 84 ProSiteProfiles EF-hand calcium-binding domain profile. 41 76 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1285 Lan-Chr9 20041926 20042599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1285 4 84 EF-hand Containing Proteins AT3G03430 69.136 1.57e-36 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1285 K13448 - gmx:100806709 145.591
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0295 11 1917941 1918441 Lan9g1285 9 20041926 20042599 LSH
Lan16g0627 16 7961632 7962076 Lan9g1285 9 20041926 20042599 PCT
Lan9g1285 9 20041926 20042599 Lan16g0627 16 7961632 7962076 PCT