Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0627 ATGGCTGATGATCCACAACATGTAGCTGACAGGGACCACATTTTTAAGCATTTCGACGCAAACGGGGATGGCAAAATCTCTTCAGCAGAGCTTGGTGATGCACTTAAGACACTTGGTTCAGTGACGAATGAGGAAGTGCAACGAATGATGGCCGAAATCGATACGGATGGTGATGGCTGCATTTCATATGAGGAATTCTCAGAATTTGCACGAAACAACCGTGGCCTAGTGAAGGATGTTGCTAAAGTTTTTTAA 255 0.4431 MADDPQHVADRDHIFKHFDANGDGKISSAELGDALKTLGSVTNEEVQRMMAEIDTDGDGCISYEEFSEFARNNRGLVKDVAKVF* 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0627 84 ProSiteProfiles EF-hand calcium-binding domain profile. 6 41 IPR002048 GO:0005509
Lan16g0627 84 CDD EFh 13 71 IPR002048 GO:0005509
Lan16g0627 84 PANTHER POLCALCIN NIC T 1 1 84 - -
Lan16g0627 84 SUPERFAMILY EF-hand 11 69 IPR011992 -
Lan16g0627 84 Pfam EF-hand domain pair 14 70 IPR002048 GO:0005509
Lan16g0627 84 ProSitePatterns EF-hand calcium-binding domain. 54 66 IPR018247 -
Lan16g0627 84 ProSiteProfiles EF-hand calcium-binding domain profile. 44 76 IPR002048 GO:0005509
Lan16g0627 84 ProSitePatterns EF-hand calcium-binding domain. 19 31 IPR018247 -
Lan16g0627 84 SMART efh_1 10 38 IPR002048 GO:0005509
Lan16g0627 84 SMART efh_1 45 73 IPR002048 GO:0005509
Lan16g0627 84 PANTHER TROPONIN 1 84 - -
Lan16g0627 84 Gene3D - 2 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0627 Lan-Chr16 7961632 7962076 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0627 4 84 EF-hand Containing Proteins AT3G03430 72.840 1.28e-38 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0627 K13448 - csv:101214153 142.124
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g0627 16 7961632 7962076 Lan11g0295 11 1917941 1918441 PCT
Lan16g0627 16 7961632 7962076 Lan9g1285 9 20041926 20042599 PCT
Lan11g0295 11 1917941 1918441 Lan16g0627 16 7961632 7962076 PCT
Lan9g1285 9 20041926 20042599 Lan16g0627 16 7961632 7962076 PCT