Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0295 ATGGCAGAAGATCATCCACAAGATGTAGCCGATAGGGAACGTATTTTCAAACATTTCGACGCCAATGGCGATGGCCAAATCTCGTCATCGGAGCTTGGTGATGCACTAAAAGCACTTGGATCAGTGACAGTAGAGGAAGTGAAGAAAATGATGGATGAGATTGACACTGATGGGGATGGTTTCATTTCATATGAGGAGTTCACAGAATTTGCTAGAGCCAACCGTGGTTTAGTAAGGGATGTTGCCAAGATTTTTTAA 258 0.4302 MAEDHPQDVADRERIFKHFDANGDGQISSSELGDALKALGSVTVEEVKKMMDEIDTDGDGFISYEEFTEFARANRGLVRDVAKIF* 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0295 85 ProSitePatterns EF-hand calcium-binding domain. 55 67 IPR018247 -
Lan11g0295 85 CDD EFh 13 72 IPR002048 GO:0005509
Lan11g0295 85 PANTHER POLCALCIN NIC T 1 1 85 - -
Lan11g0295 85 ProSiteProfiles EF-hand calcium-binding domain profile. 7 41 IPR002048 GO:0005509
Lan11g0295 85 Pfam EF-hand domain pair 14 72 IPR002048 GO:0005509
Lan11g0295 85 SMART efh_1 46 74 IPR002048 GO:0005509
Lan11g0295 85 SMART efh_1 11 39 IPR002048 GO:0005509
Lan11g0295 85 ProSiteProfiles EF-hand calcium-binding domain profile. 42 77 IPR002048 GO:0005509
Lan11g0295 85 PANTHER TROPONIN 1 85 - -
Lan11g0295 85 Gene3D - 2 85 - -
Lan11g0295 85 SUPERFAMILY EF-hand 10 71 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0295 Lan-Chr11 1917941 1918441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0295 10 85 EF-hand Containing Proteins AT3G03430 73.684 2.76e-37 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0295 K13448 - gmx:100806709 149.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0295 11 1917941 1918441 Lan9g1285 9 20041926 20042599 LSH
Lan16g0627 16 7961632 7962076 Lan11g0295 11 1917941 1918441 PCT
Lan11g0295 11 1917941 1918441 Lan16g0627 16 7961632 7962076 PCT