Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0508 ATGGCTGGAGAAGATAGTGATGGACATGAAGGCGATGGATATATACCCGAGGATCCGCATTTTTTTCCTAAATTTGATTTTGATGATGAAAACGATAGTGATAACTTTGGATTTTCGAACATACTACACCCTGATCAATATGATGAAGGGGGTTTGGTTGGAGAAGCCAATCCTAATGAAAACTATTTTGATGGACGTCATCTCGGATATTTGCCAAAGAGTCCTGATTTTTTCATAGATATAAATTCTGATATGGAAACTGAGATTAATACCGATGAATTTCGTGAGCTGCTGCGACCTCATGAACATGATGCAAGAACTTTGGTAGAGAATGCTGCCAATCCTAATGAAAACCATTTTGATGAACATGATGTTGGATATGTGCCTCAGGAGCCGATTCTCCCCCAACAAATTCATATTGATCAGGGAATTGCACCCTTTGTCTTCGAATTTTCGCATCCCAAAGAACATGATGATGCAGACACTTTAATTGAGGAAGATGCGAATCTTTCTGAGAACTATTCTCATGGACATGAAGTTGGGGATTTTCCTACAGATTATCACTCACAGGAGCATATCATTGAGGAGCATCATGTTGAAGGAAACATGATTGGAAACTTTGCTACTTCCGAACAACATGGATCCGAGAATGACTTTAGAGGAAATAGAACAGAAAAGTGGCCAGGATGGCCTGGACAAAACATTTTCAGGTTGTTGGTTCCGGTGAAACAAGTTGGCTGCATTATTGGCCCTAAGGGCGAGTATATTAAGAAAATCATCGAAGAGACTATGGCGCGCATTAAAGTTCTTAGTGGTCCACCTGGAATAACCGAAAGAGCAGTATTGATTTCTGCAAGAGAAGTACCACATTGCACCGTGCCACCCGCCGTCAAGGGTTTGTTAAGGGTTCATGAACAAGTTCTCAATGACACTGCTTCTATCACATCCGGTGCTGTATGCTCTATCATCACTAGGCTTCTAGTACCAGATAGTCAAGGACGAAGCTTGATCGGCAAGCAAGGTTTTACAATAAAATCCATCCAAGAGTATACCGGTTGCATTATACGGGTTCTCAGATCAGGAAGCAGACCAGTTTTTGCATTGGAAGATGATAGTGTTGTCGAAATACACGGAGAATCTGCTGGAGTTCACAAGGCTGTTGAACTTATTGCACTTCATTTACGTAAGTTCTTGGTCGATCACAGCATAATCGGAGTATTTGAAGAACAGATGCAAAGGCTAGATGTTCAAGTTAACAACAATATGATACAATCCCAAACTTGGGGTCTTCCTCCTCTAGGAGTTCCAGAAAATCCTGTTGCTGCTGCTGGTGGACACGATTTTGCGTCGAACCATCAATACATGCCGCATTTTAACCACTATGGTAATTATTACCACCTTCCTCAGGATCCATCACCTGCCTATGCAACAGATTCTTCCATGGAAGTTCATTCATCAAGTGTAGAACCAAAATCGTCGGTTGAGACTAAGGACACACAATACATGCAAATTCCTATGTCATACGCAGATGCTGTATTTGGAGCATCAGGCGCGAATATCAGCTACATTCGTAGTGCTAGTGGAGCAAGTGTTACAATTCGGGAGACAGAGTATATGCCAGGGCTGATGACTGTCGAAATCAGCGGGACTTCTTCGGAAATACAGACAGCTGAACTCCTTGTTCAGAATTTTTTGGCTGGGGCTACATGCACAGAACATGATCATATAGAAGGATCAAATAGCCGAAGTGACAGTTCCTATGCACCTTCTGAATCCTCTGGTGCTGGTGATCACACAAACTTGCCTTCACAAAATGATGTTCCCTTAGATGGCACCACTTTTGGCCATTAA 1851 0.4219 MAGEDSDGHEGDGYIPEDPHFFPKFDFDDENDSDNFGFSNILHPDQYDEGGLVGEANPNENYFDGRHLGYLPKSPDFFIDINSDMETEINTDEFRELLRPHEHDARTLVENAANPNENHFDEHDVGYVPQEPILPQQIHIDQGIAPFVFEFSHPKEHDDADTLIEEDANLSENYSHGHEVGDFPTDYHSQEHIIEEHHVEGNMIGNFATSEQHGSENDFRGNRTEKWPGWPGQNIFRLLVPVKQVGCIIGPKGEYIKKIIEETMARIKVLSGPPGITERAVLISAREVPHCTVPPAVKGLLRVHEQVLNDTASITSGAVCSIITRLLVPDSQGRSLIGKQGFTIKSIQEYTGCIIRVLRSGSRPVFALEDDSVVEIHGESAGVHKAVELIALHLRKFLVDHSIIGVFEEQMQRLDVQVNNNMIQSQTWGLPPLGVPENPVAAAGGHDFASNHQYMPHFNHYGNYYHLPQDPSPAYATDSSMEVHSSSVEPKSSVETKDTQYMQIPMSYADAVFGASGANISYIRSASGASVTIRETEYMPGLMTVEISGTSSEIQTAELLVQNFLAGATCTEHDHIEGSNSRSDSSYAPSESSGAGDHTNLPSQNDVPLDGTTFGH* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0508 616 CDD KH-I 499 562 - -
Lan9g0508 616 ProSiteProfiles Type-1 KH domain profile. 497 561 - -
Lan9g0508 616 Gene3D K Homology domain, type 1 232 303 IPR036612 GO:0003723
Lan9g0508 616 ProSiteProfiles Type-1 KH domain profile. 233 300 - -
Lan9g0508 616 PANTHER POLY(RC)-BINDING-LIKE PROTEIN 166 595 - -
Lan9g0508 616 MobiDBLite consensus disorder prediction 581 610 - -
Lan9g0508 616 SMART kh_6 320 395 IPR004087 GO:0003676
Lan9g0508 616 SMART kh_6 232 305 IPR004087 GO:0003676
Lan9g0508 616 SMART kh_6 496 566 IPR004087 GO:0003676
Lan9g0508 616 Gene3D K Homology domain, type 1 485 568 IPR036612 GO:0003723
Lan9g0508 616 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 492 568 IPR036612 GO:0003723
Lan9g0508 616 Pfam KH domain 236 284 IPR004088 GO:0003723
Lan9g0508 616 Pfam KH domain 499 562 IPR004088 GO:0003723
Lan9g0508 616 Pfam KH domain 324 391 IPR004088 GO:0003723
Lan9g0508 616 Gene3D K Homology domain, type 1 322 397 IPR036612 GO:0003723
Lan9g0508 616 CDD PCBP_like_KH 236 304 - -
Lan9g0508 616 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 318 401 IPR036612 GO:0003723
Lan9g0508 616 CDD PCBP_like_KH 325 391 - -
Lan9g0508 616 MobiDBLite consensus disorder prediction 1 26 - -
Lan9g0508 616 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 227 286 IPR036612 GO:0003723
Lan9g0508 616 ProSiteProfiles Type-1 KH domain profile. 321 390 - -
Lan9g0508 616 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 166 595 - -
Lan9g0508 616 MobiDBLite consensus disorder prediction 575 616 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0508 Lan-Chr9 7897934 7902839 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0508 K21444 - gmx:100813235 531.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0508 9 7897934 7902839 Lan20g0163 20 1057450 1064017 PCT
Lan9g0508 9 7897934 7902839 Lan4g1750 4 26143500 26148986 PCT
Lan20g0163 20 1057450 1064017 Lan9g0508 9 7897934 7902839 PCT
Lan4g1750 4 26143500 26148986 Lan9g0508 9 7897934 7902839 PCT