Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan20g0163 | ATGTCTGGGGAAATTGTTTTTGATGGACAAGATGCAGGGTATGTGCCCGAGAACCCTGATTTTCCGCAAAACCATTCCGAAGAACATGATGAAGGAAATGTAGTTGACGATGAATCTGGGTTTCCTCAACAGCTTGATGAACATGATGCTGGAATCTTAGCTGAGGAGGAAGCCAATCCTCCGGAAAATGAATTTGATGGTCATGGTGTTGAAGATTTGCCTGGAAACACTGACTCTCTTCCACAAGATCATACTGTAACTGAGGCAGAACATAATGATGGAGGAGATGTGACCGAGAATTTTACTTCTCAAGAAGTACAAGGACCTGAGGGTGATTCAAAACCAAGTGAAATAAAAAAATGGCCTGGGTGGCCTGGAGAGAATGTTTTCAGAATGCTGGTTCCTGCGCAAAAAGTTGGCAGCATTATTGGCCGCAAGGGAGAGTTTATCAAGAAAATCACTGAAGAGACTAAAGCTCGAATTAAGATTCTTGATGGTCCACCAGGAACCACCGAAAGAGCAGTAATGGTTTCTGCAAAAGAAGAGCCAGATCTCCCCTTACCGCCTGCTGTGGAAGGTTTGTTAAGGGTTCATAAACAAGTTGTAAATGTTGACCAAGATCCTGCAGATAGTGCAACAGGTGCAGGACGTCCAGTTGTTACAAGGCTTCTAGTGGCAGATACTCAAGCTGGAAGTTTGATCGGGAAGCAGGGGTCCACTATAAAATCCTTCCAAGATGCCTCTGGTTGCAATATACGTGTTCTTGGATCAGAACACTTGCCAATTTTTGCTCTGCGAGGTGATAGTGTTGTTGAAATACAAGGCGAGTCTGCTGGGGTTCACAAGGGTGTTGAACTTATTGCACTTCATCTACGGAAGTTCTTGGTTGACCGCAGCATAGTTGGAGTATTTGAAACACAGATGCAAAGGCTGGATGTTCGAGTTAACCAGAATTCGGCACCACACCAGCCACACCACCGACCTTGGGGTCCTCCTCCTCGTCAAGAGTTTCCAGCTCCTAGTGGTGGATCTGCTTTTGCACCCAATCCTCAATTCATGCCACCTTCACATAACTATGATAACTATTATCCACCTACTGACTTACCTCCCATGGATAAGCACCTCCATCAGGGTCCACCACCTGCCTATTCAAGGGATCCTTCTACGGGAATTCATTCATCCAGTGCACCACCTCAGCAATCTGTTGCGACTAAGCAGGTCACACAGCACATGCAAATTCCTCTTTCCTATGCAGATGCTGTTATTGGAGCATCAGGATCAAATATCAGCTACATTCGCCGTGCTAGTGGGGCAAGTATTACCATTCAGGAGACCAGAGGTGTGCCAGGGGAGATGACTGTTGAGATAAGTGGTACTGCATCACAAATACAGACGGCCCAACAGCTCGTGCAGAATTTCATGGCTGAAGCTGCAAATGCTGCATCAGCTCAGCAGGATCATATGGGGGGAACAGTGAACCAAGGTTACAATGCCTATCCGACTAATGCTCCTGTTTATCAATCTCCACCGGCAAATGCTAGTGCCCATGCTCCTTCTGCAGACTATGGTTCAGTATATGGCACCAATTATGGATATTAA | 1599 | 0.4603 | MSGEIVFDGQDAGYVPENPDFPQNHSEEHDEGNVVDDESGFPQQLDEHDAGILAEEEANPPENEFDGHGVEDLPGNTDSLPQDHTVTEAEHNDGGDVTENFTSQEVQGPEGDSKPSEIKKWPGWPGENVFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTTERAVMVSAKEEPDLPLPPAVEGLLRVHKQVVNVDQDPADSATGAGRPVVTRLLVADTQAGSLIGKQGSTIKSFQDASGCNIRVLGSEHLPIFALRGDSVVEIQGESAGVHKGVELIALHLRKFLVDRSIVGVFETQMQRLDVRVNQNSAPHQPHHRPWGPPPRQEFPAPSGGSAFAPNPQFMPPSHNYDNYYPPTDLPPMDKHLHQGPPPAYSRDPSTGIHSSSAPPQQSVATKQVTQHMQIPLSYADAVIGASGSNISYIRRASGASITIQETRGVPGEMTVEISGTASQIQTAQQLVQNFMAEAANAASAQQDHMGGTVNQGYNAYPTNAPVYQSPPANASAHAPSADYGSVYGTNYGY* | 533 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan20g0163 | 532 | Pfam | KH domain | 221 | 288 | IPR004088 | GO:0003723 | |
| Lan20g0163 | 532 | Pfam | KH domain | 408 | 471 | IPR004088 | GO:0003723 | |
| Lan20g0163 | 532 | Pfam | KH domain | 130 | 182 | IPR004088 | GO:0003723 | |
| Lan20g0163 | 532 | SMART | kh_6 | 126 | 199 | IPR004087 | GO:0003676 | |
| Lan20g0163 | 532 | SMART | kh_6 | 217 | 292 | IPR004087 | GO:0003676 | |
| Lan20g0163 | 532 | SMART | kh_6 | 405 | 475 | IPR004087 | GO:0003676 | |
| Lan20g0163 | 532 | ProSiteProfiles | Type-1 KH domain profile. | 127 | 194 | - | - | |
| Lan20g0163 | 532 | ProSiteProfiles | Type-1 KH domain profile. | 218 | 287 | - | - | |
| Lan20g0163 | 532 | MobiDBLite | consensus disorder prediction | 317 | 402 | - | - | |
| Lan20g0163 | 532 | MobiDBLite | consensus disorder prediction | 22 | 71 | - | - | |
| Lan20g0163 | 532 | MobiDBLite | consensus disorder prediction | 387 | 402 | - | - | |
| Lan20g0163 | 532 | MobiDBLite | consensus disorder prediction | 96 | 110 | - | - | |
| Lan20g0163 | 532 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 210 | 301 | IPR036612 | GO:0003723 | |
| Lan20g0163 | 532 | ProSiteProfiles | Type-1 KH domain profile. | 406 | 470 | - | - | |
| Lan20g0163 | 532 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 122 | 181 | IPR036612 | GO:0003723 | |
| Lan20g0163 | 532 | CDD | PCBP_like_KH | 220 | 288 | - | - | |
| Lan20g0163 | 532 | CDD | PCBP_like_KH | 129 | 198 | - | - | |
| Lan20g0163 | 532 | Gene3D | K Homology domain, type 1 | 393 | 483 | IPR036612 | GO:0003723 | |
| Lan20g0163 | 532 | PANTHER | KH DOMAIN CONTAINING RNA BINDING PROTEIN | 51 | 526 | - | - | |
| Lan20g0163 | 532 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 400 | 476 | IPR036612 | GO:0003723 | |
| Lan20g0163 | 532 | MobiDBLite | consensus disorder prediction | 1 | 118 | - | - | |
| Lan20g0163 | 532 | PANTHER | POLY(RC)-BINDING-LIKE PROTEIN | 51 | 526 | - | - | |
| Lan20g0163 | 532 | CDD | KH-I | 408 | 471 | - | - | |
| Lan20g0163 | 532 | Gene3D | - | 127 | 295 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan20g0163 | Lan-Chr20 | 1057450 | 1064017 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan20g0163 | K21444 | - | gmx:100818363 | 805.053 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lan20g0163 | 20 | 1057450 | 1064017 | Lan4g1750 | 4 | 26143500 | 26148986 | LSH | |
| Lan9g0508 | 9 | 7897934 | 7902839 | Lan20g0163 | 20 | 1057450 | 1064017 | PCT | |
| Lan20g0163 | 20 | 1057450 | 1064017 | Lan9g0508 | 9 | 7897934 | 7902839 | PCT |