Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1750 ATGTCTGGGGAAGTTGTTTTTGATGAACAAGATGCAGGTTATGTGCCCGAGAACCTTGATTATCCGCAAAACCATTCTGATGAACATGATGAAGGAAATGTGATTGATGATGAATCTGGGTTTCCTCAACTGCAGCCTGATGAACATGATGCCGAAATATTAGCCGAGGAGGAAGCCGATCCTCTCGAAAATGAATTTGATGATCATGGTGTTGAGGAACTGCCTGGAAACACTGATTCCCTTCCACAAGAGCATACTGTAACTGAGGAGGAACATCAGGATGGAGGAGATGTGACTGAGAATTTTACTTCTCAAGAAGTACAAGGACCTGAGGGTGATTCAAAACCAAGTGAAATAAAAAAATGGCCAGGTTGGCCTGGAGAGAATGTTTTTAGAATGCTGGTTCCTGTACAAAAGGTTGGTAGTATTATTGGCCGCAAGGGAGAGTTTATCAAAAAAATCACTGAAGAGACTAAAGCTCGAATTAAAATTCTTGATGGTCCACCAGGAACCACTGAGAGAGCAGTAATGGTTTCTGCGAAAGAAGAGCCAGATCGCGCCATACCACCTGCTGTGGAAGGTTTGTTAAGGGTTCATAAACAAGTTGTCAATGTCGACCAAGATCCTGCAGACAGTGCATCAGGTGCAGGTCGTCCAGTTGTTACAAGGCTTCTAGTGGCAGATACTCAAGCTGGAAGTTTGATTGGGAAGCAAGGGTCCACTATAAAATCCTTCCAAGATGCTTCTGGTTGCAATATACGTGTTCTTGGATCAGTAGAACACTTGCCAGTTTTTGCTCTGCGAGATGACAGTGTTGTTGAAATACAAGGGGAGTCTGCTGGGGTTCACAAGGGAGTTGAACTTATTGCACTTCATCTACGTAAGTTCTTGGTTGATCGCAGCATAGTTGGAGTGTTTGAAGCAAAGATGCAAAGGCCGGATGTTCGAGTTAACCAGAATGTGCCTCCACACCAACAACACCATCAACCTTGGGGTCCTCCTCCTCCTCAAGGGTTTTCGGCTCCTGGAAGTAGTGGTGGACCTGCTTTTGCACCCAATCCTCAACTTATGCCACCTCCACATAATTATGATAACTATTACCCACCTGCTGACCTGCCTCCCATGGACAAGCACCTTCATCAGGGTCCACCACCTGCCTATGCCAGGGATCCTTCTATGGGAATTCATTCGTCCACTGCACCACCACAACAATCTGTTGTAACTAAGGTCACACAGCACATGCAAATTCCTCTATCCTTTGCAGATGCTGTTATTGGAGCATCAGGTTCAAATATCAGCTACATCCGTCGTGCTAGTGGGGCAAGTATTACAATTCAGGAGACCAGGGGTGTGCCAGGAGAGATGACTGTTGAGATAAGCGGTACTGCATCACAAATACAGGCAGCCCAACAGCTGGTGCAGAATTTCATGGCTGAAGCTGCAAGTGCTGCATCACAGCAGGAACATATGGGGGGATCAATGAACCAAGGTTACAATGCCTATGCGACAAATGCTCCTGTTTATCAATCTCCACCTTCAAATGCTAGTGGTCATACAAGCCATGCTCCTTCTGCAGACTATGGTTCTGTATATGGCACCAATTATGGCTATTAA 1614 0.456 MSGEVVFDEQDAGYVPENLDYPQNHSDEHDEGNVIDDESGFPQLQPDEHDAEILAEEEADPLENEFDDHGVEELPGNTDSLPQEHTVTEEEHQDGGDVTENFTSQEVQGPEGDSKPSEIKKWPGWPGENVFRMLVPVQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTTERAVMVSAKEEPDRAIPPAVEGLLRVHKQVVNVDQDPADSASGAGRPVVTRLLVADTQAGSLIGKQGSTIKSFQDASGCNIRVLGSVEHLPVFALRDDSVVEIQGESAGVHKGVELIALHLRKFLVDRSIVGVFEAKMQRPDVRVNQNVPPHQQHHQPWGPPPPQGFSAPGSSGGPAFAPNPQLMPPPHNYDNYYPPADLPPMDKHLHQGPPPAYARDPSMGIHSSTAPPQQSVVTKVTQHMQIPLSFADAVIGASGSNISYIRRASGASITIQETRGVPGEMTVEISGTASQIQAAQQLVQNFMAEAASAASQQEHMGGSMNQGYNAYATNAPVYQSPPSNASGHTSHAPSADYGSVYGTNYGY* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1750 537 Gene3D - 128 297 - -
Lan4g1750 537 CDD KH-I 411 474 - -
Lan4g1750 537 MobiDBLite consensus disorder prediction 51 67 - -
Lan4g1750 537 PANTHER POLY(RC)-BINDING-LIKE PROTEIN 52 531 - -
Lan4g1750 537 Pfam KH domain 411 474 IPR004088 GO:0003723
Lan4g1750 537 Pfam KH domain 131 183 IPR004088 GO:0003723
Lan4g1750 537 Pfam KH domain 222 290 IPR004088 GO:0003723
Lan4g1750 537 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 400 480 IPR036612 GO:0003723
Lan4g1750 537 MobiDBLite consensus disorder prediction 327 341 - -
Lan4g1750 537 SMART kh_6 127 200 IPR004087 GO:0003676
Lan4g1750 537 SMART kh_6 408 478 IPR004087 GO:0003676
Lan4g1750 537 SMART kh_6 218 294 IPR004087 GO:0003676
Lan4g1750 537 MobiDBLite consensus disorder prediction 319 385 - -
Lan4g1750 537 MobiDBLite consensus disorder prediction 352 367 - -
Lan4g1750 537 MobiDBLite consensus disorder prediction 1 120 - -
Lan4g1750 537 ProSiteProfiles Type-1 KH domain profile. 128 195 - -
Lan4g1750 537 Gene3D K Homology domain, type 1 397 486 IPR036612 GO:0003723
Lan4g1750 537 ProSiteProfiles Type-1 KH domain profile. 219 289 - -
Lan4g1750 537 CDD PCBP_like_KH 130 199 - -
Lan4g1750 537 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 52 531 - -
Lan4g1750 537 MobiDBLite consensus disorder prediction 22 36 - -
Lan4g1750 537 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 211 303 IPR036612 GO:0003723
Lan4g1750 537 CDD PCBP_like_KH 221 290 - -
Lan4g1750 537 ProSiteProfiles Type-1 KH domain profile. 409 473 - -
Lan4g1750 537 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 119 183 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1750 Lan-Chr4 26143500 26148986 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1750 K21444 - gmx:100818363 785.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g1750 4 26143500 26148986 Lan4g1750 4 26143500 26148986 ECH
Lan20g0163 20 1057450 1064017 Lan4g1750 4 26143500 26148986 LSH
Lan9g0508 9 7897934 7902839 Lan4g1750 4 26143500 26148986 PCT
Lan4g1750 4 26143500 26148986 Lan9g0508 9 7897934 7902839 PCT