Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan9g0460 | ATGAAGGGTATTGTTTCACTGGTAACAGGAAGGGTTGGTCCAAGTGGGTTTGGATCAGCTTCAACTGCAGAGCAAGTTACTGAAGGAATTGATGCTAGCAACCTCACTGTAATTATCACAGGAGGAGCAAGTGGAATTGGATTTGAGACAGCAAGAGTATTGGCTCTTAGAAAGGCACATGTGATCATTGCTGTAAGAAACATGGTGTCTGCAAAAGAAGCTAGACAACTTATACTTGAGGAGAATCAATCTGCTAGAGTAGACATACTCAAGCTTGATCTATGCTCAGTCAATTCTGTTAGATCGTTTGTGGACAACTTCATTGCTCTTGATCTTCCTCTCAACATCTTAATAAACAATGCTGGAGTCATGTTCTGCCCTTTCAGCCTCACAGAGGATGGGATTGAGATGCAGTTTGCAACAAACCATCTTGGCCATTTTCACTTGACAAATCTACTTCTTGACAAAATGAAACAAACTGCAAAAGTCACTGGAATTGAGGGAAGGATCATAAATCTGTCATCAATTGCTCATAATTTCACTTACAGAAAGGGTATTAGATTTGATAAGATCAATGATCGAAAAGGTTATACTAACAAGAGAGCATATGGACAATCAAAATTAGCCAATATATTACACACTAATGAACTTTCTAGGATTCTGCAGGAAGAAGGTGTGAACATCACAGCCAACTCAGTTCACCCAGGAGTTATAATGACTCCTCTCATGAGACATTCTTCTTACCTTATGTATTGCTTGAAGATCTTCACCTTTTACATATGGAAGAATGTCCCACAGGGAGCAGCTACAACATGCTATGTTGCACTCCACCCAAGTGTGAAAGGTGTAACTGGGAAGTACTTTGTGGATTGCAATGAGTTTAAGCCAAGTTCATTTGCCTCAAGCCCACAGTTAGGGAAGAAACTCTGGGATTTCAGCAACAAGTTGATCACTTCAATTTCGAAATCTTAA | 972 | 0.3981 | MKGIVSLVTGRVGPSGFGSASTAEQVTEGIDASNLTVIITGGASGIGFETARVLALRKAHVIIAVRNMVSAKEARQLILEENQSARVDILKLDLCSVNSVRSFVDNFIALDLPLNILINNAGVMFCPFSLTEDGIEMQFATNHLGHFHLTNLLLDKMKQTAKVTGIEGRIINLSSIAHNFTYRKGIRFDKINDRKGYTNKRAYGQSKLANILHTNELSRILQEEGVNITANSVHPGVIMTPLMRHSSYLMYCLKIFTFYIWKNVPQGAATTCYVALHPSVKGVTGKYFVDCNEFKPSSFASSPQLGKKLWDFSNKLITSISKS* | 324 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan9g0460 | 323 | Pfam | short chain dehydrogenase | 36 | 180 | IPR002347 | - | |
| Lan9g0460 | 323 | PANTHER | SHORT-CHAIN DEHYDROGENASE TIC 32, CHLOROPLASTIC-LIKE | 6 | 319 | - | - | |
| Lan9g0460 | 323 | PANTHER | RETINOL DEHYDROGENASE | 6 | 319 | - | - | |
| Lan9g0460 | 323 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 35 | 296 | IPR036291 | - | |
| Lan9g0460 | 323 | PRINTS | Short-chain dehydrogenase/reductase (SDR) superfamily signature | 112 | 123 | IPR002347 | - | |
| Lan9g0460 | 323 | PRINTS | Short-chain dehydrogenase/reductase (SDR) superfamily signature | 168 | 176 | IPR002347 | - | |
| Lan9g0460 | 323 | PRINTS | Short-chain dehydrogenase/reductase (SDR) superfamily signature | 203 | 222 | IPR002347 | - | |
| Lan9g0460 | 323 | CDD | retinol-DH_like_SDR_c_like | 36 | 310 | - | - | |
| Lan9g0460 | 323 | Gene3D | - | 25 | 320 | - | - | |
| Lan9g0460 | 323 | PRINTS | Glucose/ribitol dehydrogenase family signature | 36 | 53 | IPR002347 | - | |
| Lan9g0460 | 323 | PRINTS | Glucose/ribitol dehydrogenase family signature | 112 | 123 | IPR002347 | - | |
| Lan9g0460 | 323 | PRINTS | Glucose/ribitol dehydrogenase family signature | 162 | 178 | IPR002347 | - | |
| Lan9g0460 | 323 | PRINTS | Glucose/ribitol dehydrogenase family signature | 226 | 243 | IPR002347 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan9g0460 | Lan-Chr9 | 6899268 | 6903416 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lan9g0460 | 35 | 244 | Miscellaneous Gene Families | AT2G29340 | 28.638 | 2.16e-08 | 52.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan9g0460 | K11153 | - | gmx:100801849 | 575.089 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lan9g0460 | 9 | 6899268 | 6903416 | Lan5g1213 | 5 | 26028322 | 26031499 | LSH | |
| Lan9g0460 | 9 | 6899268 | 6903416 | Lan11g1378 | 11 | 21195155 | 21204070 | PCT | |
| Lan9g0460 | 9 | 6899268 | 6903416 | Lan20g1021 | 20 | 10967130 | 10973810 | PCT | |
| Lan11g1378 | 11 | 21195155 | 21204070 | Lan9g0460 | 9 | 6899268 | 6903416 | PCT | |
| Lan20g1021 | 20 | 10967130 | 10973810 | Lan9g0460 | 9 | 6899268 | 6903416 | PCT |