Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1021 ATGGCTGGTATCTTGTCTTTGGTAACAGGGAAGGCAGGACCTAGTGGATTTGGATCAGCCTCAACTGCAGAACATGTTACTGATGGAATTGATGCCACAAACCTTACTGCAATTATCACAGGAGGAGCAAGTGGTATTGGGTTAGAGACAGCACGGGTTCTGTGTCTTAGAAAAGCGCATGTCATTATTGCTGTGAGAAACATGGACTCAGCAAAGGAAGCTAAACAACTTATACTACAAGAAAACAAGTCTGCAAAAGTGGATATAATGAAGCTTGACCTATGTTCATTGAAGTCTGTTACATCTTTTGTGGACAAATTCATTGCTCTTGATCTTCCTCTAAATATCTTAATAAACAATGCTGGAGTCATGTTCTGCCCTTTCCAGCTCTCACAGGATGGGATTGAGATGCAGTTTGCAACAAATCATATTGGTCATTTTCATTTGACAAACCTTCTTCTTAACAAAATGAAACAAACTGCAAAAGCCACTGGAATTGAAGGAAGGATCATAAATTTGTCATCAATTGCACATACCTATACTTACGAAGAAGGCATTCGATTCGATGACATCAATGATCAAAATGGTTATTCAGACAAGAAAGCTTATGGACAGTCCAAATTAGCCAACATACTACATGCAAATGAGCTTTCTCGTCGCTTGAAGGAAGAAGGTGTGAACATCACAGCCAACTCAGTCCATCCAGGAGTGATAATGACACCTCTTATGAGACATTCCTCTTTACTTATGAATTTTCTGAAGATGTTCACTTTTTACATATGGAAGAATGTCCCACAGGGAGCTGCCACCACATGCTATGTTGCTCTGCACCCAAGCTTGAAGGGTGTAACTGGGAAGTACTTTTTGGATTGCAATGAATTTGAACCAAGTGCATTTGGCAAAGACAAAATCTTAGCAAGTAAACTCTGGGATTTCAGCAACAATTTTATCACATCACTATCTAAAGCTTGA 972 0.3951 MAGILSLVTGKAGPSGFGSASTAEHVTDGIDATNLTAIITGGASGIGLETARVLCLRKAHVIIAVRNMDSAKEAKQLILQENKSAKVDIMKLDLCSLKSVTSFVDKFIALDLPLNILINNAGVMFCPFQLSQDGIEMQFATNHIGHFHLTNLLLNKMKQTAKATGIEGRIINLSSIAHTYTYEEGIRFDDINDQNGYSDKKAYGQSKLANILHANELSRRLKEEGVNITANSVHPGVIMTPLMRHSSLLMNFLKMFTFYIWKNVPQGAATTCYVALHPSLKGVTGKYFLDCNEFEPSAFGKDKILASKLWDFSNNFITSLSKA* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1021 323 Pfam short chain dehydrogenase 36 183 IPR002347 -
Lan20g1021 323 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 3 319 - -
Lan20g1021 323 PANTHER RETINOL DEHYDROGENASE 3 319 - -
Lan20g1021 323 CDD retinol-DH_like_SDR_c_like 36 310 - -
Lan20g1021 323 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Lan20g1021 323 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Lan20g1021 323 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Lan20g1021 323 PRINTS Glucose/ribitol dehydrogenase family signature 226 243 IPR002347 -
Lan20g1021 323 Gene3D - 26 319 - -
Lan20g1021 323 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 295 IPR036291 -
Lan20g1021 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Lan20g1021 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
Lan20g1021 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 222 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1021 Lan-Chr20 10967130 10973810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1021 39 229 Acyl Lipid Metabolism Gene Families AT5G19200 27.979 4.05e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1021 K11153 - gmx:100781156 543.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g1378 11 21195155 21204070 Lan20g1021 20 10967130 10973810 LSH
Lan9g0460 9 6899268 6903416 Lan20g1021 20 10967130 10973810 PCT
Lan5g1213 5 26028322 26031499 Lan20g1021 20 10967130 10973810 PCT
Lan20g1021 20 10967130 10973810 Lan9g0460 9 6899268 6903416 PCT
Lan20g1021 20 10967130 10973810 Lan5g1213 5 26028322 26031499 PCT