Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1213 ATGATGGGTATTGTTTCAGCCTTAACAGGGAGGGTTGGTCCTAATGGGTTTGGATCAGCTTCAACTGCAGAAAAGGTTACTGAAGGAATTGATGCCACCAATCTCACTGTAATTATCACAGGAGGAGCAAGTGGAATTGGATTGGAGACAGCAAGAGTTTTGGCTCTTAGAAAGGCACATGTGATCATTGGTGCAAGAAACATGGTGTCTGCAAATGAAGCTAGACAACATATACTTGAGGAGAATCATTCTGCTAGAGTGGACATACTCAAACTTGATCTATCTTCGGTCGATTCGGTCAAATCATTCGTGGAGAACTTCATCGCTCTTGATCTTCCTCTAAACATCTTAATAAACAATGCCGGAGTCATGTTCTGTCCTTTCAGCCTCTCCGAAGACGGTGTTGAGATGCAGTTTGCAACAAACCATCTTGGCCATTTCCTTTTGACAAGTCTTCTTCTTGACAAAATGAAACAAACTGCAAAAGAAACTGGAATTGAAGGAAGGATCATAAATCTGTCATCAATTGCTCATAATTTCACTTACCGAAACGGTATTAGATTCGATAAGATCAATGACCGAAAAGGTTATACTACCAATAGAGCATATGGTCAATCAAAATTAGCCAACATATTACACACAAATGAACTTTCTCGGCGCCTTCAGGACGAGGGTGTGAATATCACAGCAAACTCAGTTCACCCAGGAGTGATTATGACTCCTCTTATGAGACATTCCTCTTACCTAATGATGAGTATGTTAACTCTCCTTAAACTCATAAATTGCCCTTTTTCTTATCATTAA 804 0.3993 MMGIVSALTGRVGPNGFGSASTAEKVTEGIDATNLTVIITGGASGIGLETARVLALRKAHVIIGARNMVSANEARQHILEENHSARVDILKLDLSSVDSVKSFVENFIALDLPLNILINNAGVMFCPFSLSEDGVEMQFATNHLGHFLLTSLLLDKMKQTAKETGIEGRIINLSSIAHNFTYRNGIRFDKINDRKGYTTNRAYGQSKLANILHTNELSRRLQDEGVNITANSVHPGVIMTPLMRHSSYLMMSMLTLLKLINCPFSYH* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1213 267 Pfam short chain dehydrogenase 36 181 IPR002347 -
Lan5g1213 267 CDD retinol-DH_like_SDR_c_like 36 249 - -
Lan5g1213 267 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 32 249 IPR036291 -
Lan5g1213 267 Gene3D - 26 261 - -
Lan5g1213 267 PANTHER SHORT-CHAIN DEHYDROGENASE TIC 32, CHLOROPLASTIC-LIKE 6 253 - -
Lan5g1213 267 PANTHER RETINOL DEHYDROGENASE 6 253 - -
Lan5g1213 267 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Lan5g1213 267 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
Lan5g1213 267 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 222 IPR002347 -
Lan5g1213 267 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Lan5g1213 267 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Lan5g1213 267 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Lan5g1213 267 PRINTS Glucose/ribitol dehydrogenase family signature 203 222 IPR002347 -
Lan5g1213 267 PRINTS Glucose/ribitol dehydrogenase family signature 226 243 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1213 Lan-Chr5 26028322 26031499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1213 35 242 Miscellaneous Gene Families AT2G29150 28.638 1.18e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1213 K11153 - gmx:100801849 411.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g1213 5 26028322 26031499 Lan5g1213 5 26028322 26031499 ECH
Lan9g0460 9 6899268 6903416 Lan5g1213 5 26028322 26031499 LSH
Lan5g1213 5 26028322 26031499 Lan11g1378 11 21195155 21204070 PCT
Lan5g1213 5 26028322 26031499 Lan20g1021 20 10967130 10973810 PCT
Lan11g1378 11 21195155 21204070 Lan5g1213 5 26028322 26031499 PCT
Lan20g1021 20 10967130 10973810 Lan5g1213 5 26028322 26031499 PCT