Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0355 ATGACCCGTTTATCTTCCTCTCTCACTCGCTTTCTCTCTCTTCTTTCTCTCTCTACCCTCCGTCTCTTCAACTCCCTCTCTCGCGTCTTCAAACTCTTCTTCTCAATGGATTCCTCTCCCTACAATCTCCGGTTCAACGACCCCGATTTCGGCCTGGACCGGGTTTATTTACTACCTCACAGATGGTGGAGTGAGTCACAATGTGATGGTGATCGTGTAGAAGGTGTTTTGTACACTGTGTTGTGTAATTCGGATTCTGAGTTTGAGATTTTGCTGCATTTGAAGAAGGAAGAGGATTGTGAGAAGATTAAAAGGTTGGAATTAGGGTTTTCTGGGCGTCAATATGCGTTGGTTTCTGAAGGGACTTGGTTGCGCGCGCTTAAGCGGTGTAATGATTTAAATAATGCAACGCAAGATTTTGGGAGCCTCTTGCACTCAGAGTCAGAAGATTGTTTGCCTGATTTGTTCCCATTGCAACTTGGGATTTTTGTTTCTTGGGAAACAAATTCACTGGTTGCAAAGATAAGCCAAAAGGAAAATGGAGCTGAGTTTTACAAGAAAGCTTGTTACATTTTCAATTCTGATTCTAACCCGATGCAAATTTGGGACTTTTCGGGGCAGACAACCCAGTTGTTTATGAACGATAAAGTTAACTTACCAGAGAATTCTACCATTCGACCTGAAAACGAGGTTCTTCTAGAGTTGCAAGTTCATGGACTTTCAGATTCTGTGAGGGAAAATGGGTGCAGTGAGATGATAGCAGATAGGTCTCAAATGGAATGTTCTTCTCACAGTGGCTCTGTCATGATGAATGGATGCACTGAAAGTGTGATCTGCAATGTAAAACAATTGAACTCCTTTCGAGGCAATATCTGTAAAGCAATTCGATCTTTGGGCTTGACAGGATTGCAGAATCTTGGAAATACATGTTTTATGAATAGTGCCATTCAGTGTCTGGCTCACACCCCAAAGCTTGTTGATTTTTTCCTTGGAGAATACAGTAAAGAGATAAATTATGAAAATCCCTTGGGGATGAATGGAGAACTTGCCTTATCTTTTGGTGATTTACTTAGAAGGCTCTGGGTTCCTGGAGCAAACCCTGTGTCACCAAGAACGTTCAAGATGAAACTGGGTAATTTTGCTCCTCGGTTTAGTGGTTATAGCCAGCACGACACTCAAGAACTTCTAGCTTTTTTGTTGGATGGACTGCATGAAGACCTAAACCGTGTAAAACGCAAGCCATATCATGAAGTTAAGGATGCAGATGGCCGTCCAGATGATGAAGTGGCAGAAGAGTACTGGCGAAATTATCTTGCTCGCAATGATTCCGTTGTGGTTGATTTATTCCAAGGTCAATTTCGGTCGACATTGGTTTGCCCTATGTGCAAGAAGGTTTCTGTCACGTTTGACCCATTTATGTATTTATCTCTGCCTTTACCTTCTACAACGATGCGAACCATGACTTTGACTGTTATGAGCACTGATGGGATTACCATGCCTTCTGTAATTACCATAACCGTGCCTGAGCGTGGTACACTCAAGGATCTAGTTGGGGCCTTAAGTGCTTCTTGTTCTCTAGGAGATGATGAAACACTATTGGTGGCTGAGATATACAAGAATCGGGTATATCGATTTTTTGAGGAGCCATCTGATTCATTAGCTGATATTAGAGATATAGAGAAACTTGCCGCTTACCGATTACAGAAAAATAGTGAAGCTAGTCCCTTGGTTGTTTTCGTGCATGAACTGGCGGAAAAGTACCATTTTTCTGGGAAGGAGAGGTTTGATTATAGATCATTTGGTATTCCAGTTATGGCAAGGTTGTCAAATATTTCTGACGGAGATGATGTTCGTAGGGAGTTTCTGAAGCTAATCAATCCATTTATGATATCCAATGAAGATATATTAGATGAGTGTGATAAGGAAGAAAAGGCCATTAAAAAACTTAGTGAAGATGATGAAATGGGTGAAACTTCTAGTTCTGCAGCAGTAGGAAGTGATGAAGACTCAATCACTGGAACAGAAGATGACTTTGAATTCTACTTACCTGGTGTGCAAGGAATTGGGAATGTGAAGATAAAATTGAATGAACCATTACCATTCACAGTGTTACCTGGGAAGCTGGAGGTGCTTGTCATATGGTCAGATAAGATGCTTAAAAAGTACGATACATACCGTCTCAACATGTTGCCTGAGGTTTGCAAGCCCCAGCAATTCACCAAGAGAACACAAGAATCAATATCTATTTACAAGTGTCTTGAAGCCTTTTTGAAAGAGGAACCTCTTGGGCCAGAAGATATGTGGCACTGTCCTACTTGCAAAGAACCTCAGCAAGCAACTAAAAAACTAGATCTTTGGAGATTGCCTGAAATCCTTGTTGTTCATTTGAAGAGGTTCTCATACAGTCGATTCTTCAAGAACAAGCTGCAAACATTCGTTGATTTTCCAATAAATGATCTGGATTTCTCAAGCTACATTGCCCGCGGGAATAATCAGTCTTCAAATGGCTACATGTTGTATGCAATTAGTTGTCACTATGGAGGGTTAGGAGGAGGTCACTATACAGCATTTGTCCGTTATGGCCATGATACATGGTATGAGTTTGATGATAGCAGGGTTATCCCTGTCAGTGAGGAAATGATAAAGACTGATGCTGCTTATGTTCTTTTCTACAAGAAAGTTCAGATTAAAACATAG 2697 0.4112 MTRLSSSLTRFLSLLSLSTLRLFNSLSRVFKLFFSMDSSPYNLRFNDPDFGLDRVYLLPHRWWSESQCDGDRVEGVLYTVLCNSDSEFEILLHLKKEEDCEKIKRLELGFSGRQYALVSEGTWLRALKRCNDLNNATQDFGSLLHSESEDCLPDLFPLQLGIFVSWETNSLVAKISQKENGAEFYKKACYIFNSDSNPMQIWDFSGQTTQLFMNDKVNLPENSTIRPENEVLLELQVHGLSDSVRENGCSEMIADRSQMECSSHSGSVMMNGCTESVICNVKQLNSFRGNICKAIRSLGLTGLQNLGNTCFMNSAIQCLAHTPKLVDFFLGEYSKEINYENPLGMNGELALSFGDLLRRLWVPGANPVSPRTFKMKLGNFAPRFSGYSQHDTQELLAFLLDGLHEDLNRVKRKPYHEVKDADGRPDDEVAEEYWRNYLARNDSVVVDLFQGQFRSTLVCPMCKKVSVTFDPFMYLSLPLPSTTMRTMTLTVMSTDGITMPSVITITVPERGTLKDLVGALSASCSLGDDETLLVAEIYKNRVYRFFEEPSDSLADIRDIEKLAAYRLQKNSEASPLVVFVHELAEKYHFSGKERFDYRSFGIPVMARLSNISDGDDVRREFLKLINPFMISNEDILDECDKEEKAIKKLSEDDEMGETSSSAAVGSDEDSITGTEDDFEFYLPGVQGIGNVKIKLNEPLPFTVLPGKLEVLVIWSDKMLKKYDTYRLNMLPEVCKPQQFTKRTQESISIYKCLEAFLKEEPLGPEDMWHCPTCKEPQQATKKLDLWRLPEILVVHLKRFSYSRFFKNKLQTFVDFPINDLDFSSYIARGNNQSSNGYMLYAISCHYGGLGGGHYTAFVRYGHDTWYEFDDSRVIPVSEEMIKTDAAYVLFYKKVQIKT* 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0355 898 Gene3D Cysteine proteinases 710 898 - -
Lan9g0355 898 Coils Coil 632 652 - -
Lan9g0355 898 Pfam Ubiquitin carboxyl-terminal hydrolase 301 891 IPR001394 GO:0004843|GO:0016579
Lan9g0355 898 SUPERFAMILY Cysteine proteinases 299 893 IPR038765 -
Lan9g0355 898 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 32 895 - -
Lan9g0355 898 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 32 895 - -
Lan9g0355 898 CDD Peptidase_C19R 747 892 - -
Lan9g0355 898 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 837 854 IPR018200 GO:0004843|GO:0006511
Lan9g0355 898 Gene3D Cysteine proteinases 291 515 - -
Lan9g0355 898 MobiDBLite consensus disorder prediction 648 670 - -
Lan9g0355 898 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 302 317 IPR018200 GO:0004843|GO:0006511
Lan9g0355 898 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 301 894 IPR028889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0355 Lan-Chr9 5360785 5367194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0355 748 898 Miscellaneous Gene Families AT4G31670 33.117 4.30e-19 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0355 - K21343 gmx:100791802 1249.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0355 9 5360785 5367194 Lan5g1065 5 23950607 23958000 LSH
Lan9g0355 9 5360785 5367194 Lan19g0343 19 4169940 4177551 LSH