Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1065 ATGGATTACCTCAACAACGACGACGAATTCGATTCCTCTTCTTCCTACACAGTTCGGTCCAACCGTCGCTTCCACCAAGACGATGAACCCGATTTCGGTCTGGACCGGGTTTGCTTAATCCCTTACAGGTGGTGGATTGATGCGCAATGTGAAAGTGATCGCGTTGAAGGTGTTTTGTATACAGTGTCGTGTAATTCTGATTCCGAGTTTGAGATTTTGCTGCATTTGAAGAAAGAGGAGGATCGTGAGAAGATTAAACGGTTAGAGTTAGGGTTTTCAGAGCGTCGATATGCGTTGGTTCCCGAAGGGACATGGTTGCGCGCGCTTAAGCGGTATAATGATTTTAATAATACAATGAAAGATTTTAGGAGCCTCGTCCACTCAGAAGCAGAGGACTGTTTGCTTGATTTGTTCCCTTTGCAACTTAGAATATTTGTTTCTTGGGAAACAAATTCACTGGTCGCGAAGATAAGCCAAAAGGAAAACATGGATGAGTTTTACAAGAAAGCTTGTTACATTTTCGATTCTGAGTATAATCTGGTGCATATTTGGGACTTTTCAGGGCAGACAACCCAGTTGTTCATGAATGACAAAGTTAGGTTACAAGACAATTCCGCCTTTCAACCTGGAAAAGAGGTTCTTCTGGAGTTGCAAGTTCATGGACTTTCAGATTCTATGAGAGACAATGGGTGCAGTGAGAAGATTGCAGATAGGTCTGAGATGGAATGTTCTTCTCACAGTGGCTCTGTCATGATGAATGGATGCACTGGAAGTGTGATCCGCAATATAAAACAAACCAACTCCTTTCAAGGCAATAGCTATAGAGCAATTCGGTCTTTGGGCTTGATAGGATTGCATAATCTTGGAAATACATGTTTTATGAATAGTGCCATTCAGTGTTTGGCTCACACCACAAAGCTTGTTGATTTTTTCCTTGGGGATTACCGTAAAGAGATAAATTATGAAAATCCCTTGGGAATGAATGGAGAACTTGCTTTAGCTTTTGGTGATTTACTTAGAAGGCTTTGGGTTCCTGGAGCAAGTCCTGTGTCACCAAGAACGTTCAAGAGTAAACTGGCTAATTTTGCTCCTCAGTTTTGTGGTTATAGCCAGCATGACTCTCAAGAACTTTTAGCTTTTTTGTTGGACGGACTGCATGAAGACCTTAATCGTGTCAAACGCAAGCCATATCATGAAGTTAAGGATGCAGATGGCCGCCCAGATGATGAATTGGCAGAAGAGTACTGGCGAAATCATCTTGCTCGCAATGATTCCATTGTAGTTGATTTATGCCAAGGTCAATTTCGCTCGACATTGGTTTGCCCTATGTGCAAGAAGGTTTCTATCACGTTTGATCCTTTTATGTACCTTTCTCTGCCTTTACCTTCAACAATGATGCGGACCATGACTTTGACTGTTATGAGCACTGATGGGATTACCATGCCTTCTATAATTACGGTAACCGTCCCTGAGCGTGGTACACTAAAGGATCTAATTGGGGCCTTAAGTGCTTCTTGTTCTCTAGGGGATGATGAAACCCTGTTGGTGGCTGAGATATATAAGAATCGAATTTTTCGATTTTTGGAGGAACCATCTGAATCATTAGTTGATATTAGAGATCTAGACAAACTTGCCGCTTACCGATTGCAGAAAAATAATGAAGCTAGTCCCTTGGTTGTTTTCGTGCATGAACTTGCTGAAAAGTACTACTTTTCTGGGAAGGAGGGGTTTGATTATAGACCATTTGGCATTCCTGTTATGGCAAGGTTGTCAAGTATTTCTGGTGGCGATGATGTTCGTAGGGAGTTTCTGAAGCTAATCAGTCCTTTTATGATGTCCAATGAGGATATATTAGATGATTGTGATAAAGAAGAAGATGCCAGTAAAAAACTTACTGAAGATGATGAATTGGGTGAAACTACTAGCTCTGCAGCAGTAGTAAGTGATGAAGACTCGAACAGTGAAACAGATGACTTTGAATTCTACTTACCATTAGGAATTGGGAATGTGAAGATAAAATTGAATGAACCATTACCATTTACAGAGTTACCTGGGATGCTGCAAGTGTTTGTCTTATGGTCAGATAAGATGCTTAAAAAATATGATAAATACCATCTCAACTTATTGCCTGAGGTTTTAACGCCCCAGTTACTCCCCAAGAGAACACAAGAATCACTATCTTTTTACAAGTGCCTTGAAGCTTTTTTGAAAGAGGAACCTCTTGGCCCAGAAGACATGTGGTACTGTCCCACCTGCAAAAAACCGCAGCAAGCAACTAAAAAACTAGATCTTTGGAGATTGCCTGAAATCCTTGTTGTTCATTTGAAGAGGTTCTCATACAGTCGATTCTTCAAGAACAAGCTGGAAACATTCGTTGATTTTCCAATTAATGATCTGGACTTGTCAAGCTACATTGCCCACAGAAACAATCAGTCTTTGAACCGCTACATGTTGTATGCAATTAGTTGTCACTATGGAGGGTTAGGAGGAGGTCACTATACAGCATTTGTCCGCTATGGCCATGATACATGGTACGAGTTTGATGATAGCAGTGTTGTCCCTGTTAGTGAGGAGACGATAAAGACTTCTGCTGCTTATGTTCTTTTCTATAAGAAAGTATAG 2622 0.4096 MDYLNNDDEFDSSSSYTVRSNRRFHQDDEPDFGLDRVCLIPYRWWIDAQCESDRVEGVLYTVSCNSDSEFEILLHLKKEEDREKIKRLELGFSERRYALVPEGTWLRALKRYNDFNNTMKDFRSLVHSEAEDCLLDLFPLQLRIFVSWETNSLVAKISQKENMDEFYKKACYIFDSEYNLVHIWDFSGQTTQLFMNDKVRLQDNSAFQPGKEVLLELQVHGLSDSMRDNGCSEKIADRSEMECSSHSGSVMMNGCTGSVIRNIKQTNSFQGNSYRAIRSLGLIGLHNLGNTCFMNSAIQCLAHTTKLVDFFLGDYRKEINYENPLGMNGELALAFGDLLRRLWVPGASPVSPRTFKSKLANFAPQFCGYSQHDSQELLAFLLDGLHEDLNRVKRKPYHEVKDADGRPDDELAEEYWRNHLARNDSIVVDLCQGQFRSTLVCPMCKKVSITFDPFMYLSLPLPSTMMRTMTLTVMSTDGITMPSIITVTVPERGTLKDLIGALSASCSLGDDETLLVAEIYKNRIFRFLEEPSESLVDIRDLDKLAAYRLQKNNEASPLVVFVHELAEKYYFSGKEGFDYRPFGIPVMARLSSISGGDDVRREFLKLISPFMMSNEDILDDCDKEEDASKKLTEDDELGETTSSAAVVSDEDSNSETDDFEFYLPLGIGNVKIKLNEPLPFTELPGMLQVFVLWSDKMLKKYDKYHLNLLPEVLTPQLLPKRTQESLSFYKCLEAFLKEEPLGPEDMWYCPTCKKPQQATKKLDLWRLPEILVVHLKRFSYSRFFKNKLETFVDFPINDLDLSSYIAHRNNQSLNRYMLYAISCHYGGLGGGHYTAFVRYGHDTWYEFDDSSVVPVSEETIKTSAAYVLFYKKV* 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1065 873 Pfam Ubiquitin carboxyl-terminal hydrolase 284 870 IPR001394 GO:0004843|GO:0016579
Lan5g1065 873 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 12 873 - -
Lan5g1065 873 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 12 873 - -
Lan5g1065 873 Gene3D Cysteine proteinases 269 512 - -
Lan5g1065 873 Gene3D Cysteine proteinases 613 873 - -
Lan5g1065 873 SUPERFAMILY Cysteine proteinases 281 872 IPR038765 -
Lan5g1065 873 MobiDBLite consensus disorder prediction 628 654 - -
Lan5g1065 873 CDD Peptidase_C19R 727 871 - -
Lan5g1065 873 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 816 833 IPR018200 GO:0004843|GO:0006511
Lan5g1065 873 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 284 299 IPR018200 GO:0004843|GO:0006511
Lan5g1065 873 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 283 873 IPR028889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1065 Lan-Chr5 23950607 23958000 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1065 727 873 Miscellaneous Gene Families AT4G31670 33.333 5.89e-17 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1065 - K21343 cam:101507058 1275.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0355 9 5360785 5367194 Lan5g1065 5 23950607 23958000 LSH
Lan5g1065 5 23950607 23958000 Lan19g0343 19 4169940 4177551 LSH