Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0343 ATGACCCGTTTTCCCGATAAGCTCCGTTTATCTTCCTCCGTGACCCGTTTTCTCTCTCTTCTTTCTCTCTCCACTCTTCGTCTCTTCAAGTCCCTTTCACGTTTCTTACTCTCTCAAACCCTTCAACCTTTTCTCTCAATGGATAATCTCTTCGCCGATAACGATTACTTCAACGACGGCGACGGCGACTTCGATTCCCCCTACAGCCTCCGCTCCAACCGTCGATTTCTCCAAGATGATGATCCCGATTTCGGACTCGACCGGGTTTATTTAATCCCTTTCAGGTGGTGGATTGAGGCGCAATGTGAAGGTGATCGTGTGGAAGGTGTTTTGTACACGGTGTCGTGTTATTCTGATTCCGAGGATGAGATTTTGCTGGATTTGAGGAAGGAGGAGGAGGATCGTGAGAAGATTAAACGGTTGGAGTTAGGGTTTTCAGGGCGTCAATATGCTTTGGTTCCTGAAGGAAGTTGGTTGCGCGTGCTTAAGCGGTATAATGATTTTAATAATGCAATGAAAAATATTGGGAGCCTCTTCCACACAGAGTCAGAGGACTGTTTGCCTGATTTGTATCCCTTGCAACTAAGGATATTTGTTTGTTGGGAAACAAGTTCACTGGTTGCAAAGATAAACCAAAAGGAAAATGGGGCTAAGTTTTACAAGAAAGCTTCTTACATTTTCAATTCTGAGTATAATCCGGTGCATATTTGGGACTTTTCAGGGCAGACAACCCAGTTGTTCATGAATGACAAAGTTAGGTTACCTGGCGAGTCTGCCATTCAATCTAGAAAAGAGGTTATTCTAGAGTTGCACGTTCATGGACTTTCAGATTCTATGAGGGATGATGGTTCCAGTGGGATGATTGCAGATAGGTCTCAGTTGAAATGTTCTTCTCACAGTGGCTCTGCCATGGTGAATGGATGCTCTGAAAGTGTGATCCGCAATGTAAAAGCAACCAACTCCTTTCAAGACAATAGCTATAAAGCAATTCAATCTTTGGGCTTGACAGGATTGCAGAATCTTGGAAACACGTGTTTTATGAATAGTGCCATTCAGTGTCTGGCTCACACCCCAAAGCTTGTTGATTTTTTCCTTGGAGATTACCGTAAAGAGATTAATTTTGAAAATCCCTTGGGAATGAATGGAGAGCTTGCTTTAGCTTTTGGTGATTTACTTAGAAGGCTCTGGGTTCCCGGAGCAAGACCTGTGTCACCAGCAACATTTAAGATGAAACTGTCTAATTTTGCTCCTCAGTTTAGTGGTTATAGCCAACATGACTCTCAAGAACTTCTAGCTTTTTTGTTGGACGGACTACATGAAGACCTTAATCGTGTAAAACGCAAGCCATATCATGAAGTTAAGGATGGCGATGGCCGTCCAGATGATGAAGTGGCAGAAGAGTACTGGCGAAATCATCTTGCTCGCAATGATTCCATCGTAGTTGATTTATGCCAAGGCCAATTTCGGTCAACATTGGTTTGCCCTATGTGCAAGAAGGTTTCTATCACGTTTGACCCTTTTATGTATCTATCTCTACCTTTACCTTCTACAACAATGCGGACCATGACTTTGACTGTTATGAGCACTGATGGGATTACCATGCCTTCTACAATTACCATAACCGTGCCTGAGCGTGGTACACTCAAGGATCTTATTGGGGCCTTAAGTGCTTCTTGTTCTCTTGGAGATGATGAATCCCTATTGGTGGTTGAGGTATACAAGAATCGGATATTTCGATTTTTAGAGGAACCATCTGAGTCATTGACTGAGATTAGAGATCTAGACAAACTTGCAGCTTACCGATTACAGAAAAATAACGAAGCTGGTCCCTTGGTTGTTTTCGTACATGAACTAGCTGAGAAGTACTGTTCTGCTGGGAGAGATAGGTTTGAATATAGATCGTTTGGTGTTCCAGTTATCGCAAGGTTGTCTAGTATTTCTGATGAAAATGATGTTCGTAGGGAGTTTCTGAAGCTAATCAATCCATTTATCATGTCCAATGAAGATATATTAGATGAGTGTGATAAGGATGATAATACCAATAAAAAACGTAGTAAAGATGATGAATTGGGCGACACTACTAGCTCTGCAGCAGTAGGAAGTGATGCAGACTCAAACAATGGAACAGAGGATGATTTCGAATTCTTCTTATCTGGTGGGCAAGGATTTGGGAATTCGAAGATAAAATTGAATGAACCATTACCATTCACAGAGTTACCCCAGAAGCTGGAGGTGCATGTTGTATGGCCAGATAAGATGCTTAAGAAGTGCGATACATACCACCTCAACTTATTGCCTGAGGTTTTCAAGCCCCAGCTATTCACCAAGAGAATGCAAGAATCTGTTTCTATTTACAAGTGCCTCGAATCCTTTTTGAAAGAGGAACCTCTTGGACTAGAAGACATGTGGCACTGTCCTACCTGCAAAAAACCTCAGCAAGCAACTAAAAAACTAGATCTTTGGAGATTGCCAGAAATCCTTGTTGTTCATTTGAAGAGGTTCTCATACAACCAATTCTTCAAGAACAAGCTGGAAACCTTCGTTGACTTTCCAATTGATGATCTGGACTTCTCAAGCTACATTGCTCAGAGGAATAATCAGTCTTCCAACCATTACATGTTGTATGCAATTAGTTGTCACTATGGAGGCTTAGGAGCAGGTCACTATACAGCATTTGTCCGTTATGGGCATGATACATGGTATGAGTTTGATGATAGCAGGGTTGCCCCGGCCAATGAGGAAATGATTAAGACTTCTGCTGCTTATGTTCTTTTTTACAAGAAAGTGTAG 2790 0.4201 MTRFPDKLRLSSSVTRFLSLLSLSTLRLFKSLSRFLLSQTLQPFLSMDNLFADNDYFNDGDGDFDSPYSLRSNRRFLQDDDPDFGLDRVYLIPFRWWIEAQCEGDRVEGVLYTVSCYSDSEDEILLDLRKEEEDREKIKRLELGFSGRQYALVPEGSWLRVLKRYNDFNNAMKNIGSLFHTESEDCLPDLYPLQLRIFVCWETSSLVAKINQKENGAKFYKKASYIFNSEYNPVHIWDFSGQTTQLFMNDKVRLPGESAIQSRKEVILELHVHGLSDSMRDDGSSGMIADRSQLKCSSHSGSAMVNGCSESVIRNVKATNSFQDNSYKAIQSLGLTGLQNLGNTCFMNSAIQCLAHTPKLVDFFLGDYRKEINFENPLGMNGELALAFGDLLRRLWVPGARPVSPATFKMKLSNFAPQFSGYSQHDSQELLAFLLDGLHEDLNRVKRKPYHEVKDGDGRPDDEVAEEYWRNHLARNDSIVVDLCQGQFRSTLVCPMCKKVSITFDPFMYLSLPLPSTTMRTMTLTVMSTDGITMPSTITITVPERGTLKDLIGALSASCSLGDDESLLVVEVYKNRIFRFLEEPSESLTEIRDLDKLAAYRLQKNNEAGPLVVFVHELAEKYCSAGRDRFEYRSFGVPVIARLSSISDENDVRREFLKLINPFIMSNEDILDECDKDDNTNKKRSKDDELGDTTSSAAVGSDADSNNGTEDDFEFFLSGGQGFGNSKIKLNEPLPFTELPQKLEVHVVWPDKMLKKCDTYHLNLLPEVFKPQLFTKRMQESVSIYKCLESFLKEEPLGLEDMWHCPTCKKPQQATKKLDLWRLPEILVVHLKRFSYNQFFKNKLETFVDFPIDDLDFSSYIAQRNNQSSNHYMLYAISCHYGGLGAGHYTAFVRYGHDTWYEFDDSRVAPANEEMIKTSAAYVLFYKKV* 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0343 929 MobiDBLite consensus disorder prediction 692 706 - -
Lan19g0343 929 Pfam Ubiquitin carboxyl-terminal hydrolase 336 926 IPR001394 GO:0004843|GO:0016579
Lan19g0343 929 MobiDBLite consensus disorder prediction 675 691 - -
Lan19g0343 929 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 60 929 - -
Lan19g0343 929 Gene3D Cysteine proteinases 734 929 - -
Lan19g0343 929 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 872 889 IPR018200 GO:0004843|GO:0006511
Lan19g0343 929 CDD Peptidase_C19R 782 927 - -
Lan19g0343 929 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 337 352 IPR018200 GO:0004843|GO:0006511
Lan19g0343 929 Gene3D Cysteine proteinases 319 561 - -
Lan19g0343 929 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 60 929 - -
Lan19g0343 929 MobiDBLite consensus disorder prediction 674 707 - -
Lan19g0343 929 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 336 929 IPR028889 -
Lan19g0343 929 SUPERFAMILY Cysteine proteinases 334 928 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0343 Lan-Chr19 4169940 4177551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0343 773 929 Miscellaneous Gene Families AT4G31670 30.625 8.57e-17 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0343 - K21343 cam:101507058 1270.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0355 9 5360785 5367194 Lan19g0343 19 4169940 4177551 LSH
Lan5g1065 5 23950607 23958000 Lan19g0343 19 4169940 4177551 LSH