Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0352 ATGAACTCTTCCATTTCCATTTTCCTTCTTCTATCTCTCTTACCACTTTTTTCATTATCTTCTTCTTCATTTTCATCACCTCAAATCAATTCTAACTCAATCCTCGTTGCACTTCTTGATTCCCATTACACTGAACTCGCTGAACTTGTTGAAAAAGCACTCCTTTTACATAAACTTGAAGAAACCCTTGGGACCCACAACATCACAATCTTCGCACCAAGGAACCATGCATTGGAACGAAACCTTGACCCTGAGTTCAAGCGTTTCTTGCTTCAACCCAGAAACCTTAACTCTCTTCAAACGCTTCTCATGTCTCACATTATCCCAACCGCGATTTTTGCTTCACAACGGTGGCCGGCCACCGGCGCCGCCGTGCGGCACGAGACACTCGCCGGAGAGTATGGGTTGAGTTTGGGGGAGGATAGCTCCGGGAATAAGATTGTTGACTCCGCCGCCGTGCTCCGGCCGGATGACGTCATCAGGCCCGATGGCGTCATCCATGGGATTGACCAGTTACTGATTCCGAGATCTGTGCAGGAAGATTTCAACCGCCGCCGGAACCTCCGTGCTATTGCGGCGGTGATACCGGAGGGAGCACCGCAGGTAGATCCTCGAACTAACCGTTTGAAAAAATCAGCTCCGGTACCCGCCGGCGCGCCGCCGGTACTTCCGATCTACGACGCCATAGCTCCAGGACCGTCGATCGCTCCGGCGCCGGCTCCGGGACCCGGCGGTGCACGGCGCCACTTCAACGGAGAGCGTCAGGTAAAGGATTTCATCCAAACTCTGTTACACTACGGCGGTTACAACGAGATGGCGGATATTCTGGTTAACCTAACGTCGTTAGCGACGGAGATCGGACAATTGATATCGGAGGGTTACGTTCTCACGGTGTTAGCGCCGAACGACGAGGCGATGGCGAAACTAGCAACGGAACAATTGAGTGATCCGGGAGCACCGGAGCAGATAATGTATTATCATATAATTCCGGAGTATCAGACAGAAGAGAGTATGTATAATGCGGTTAGAAGATTCGGGAAAATTCGATATGATACACTCCGGCTGCCGCATAAAGTGGTGGCTCAGGAGGCTGATGGTTCGGTGAAATTCGGGACCGGTGAAGGTTCGGCTTATTTGTTCGATCCAGATATTTATACAGATGGGAGAATTTCTGTGCAGGGGATTGATGGAGTTTTGTTCCCTTTGGAGGAGAATGAAGAAGACTCTAATACTCAGAAGAGAACAACAACAACTAGTCCACTTGTTAAAGTTGCTGCTAAACCAAGGAGAGGGAAATTGTTTGAAGTTACCTGTAATATGCTTGGAGCTTTTGGAAAAGTCTGCTAA 1347 0.4944 MNSSISIFLLLSLLPLFSLSSSSFSSPQINSNSILVALLDSHYTELAELVEKALLLHKLEETLGTHNITIFAPRNHALERNLDPEFKRFLLQPRNLNSLQTLLMSHIIPTAIFASQRWPATGAAVRHETLAGEYGLSLGEDSSGNKIVDSAAVLRPDDVIRPDGVIHGIDQLLIPRSVQEDFNRRRNLRAIAAVIPEGAPQVDPRTNRLKKSAPVPAGAPPVLPIYDAIAPGPSIAPAPAPGPGGARRHFNGERQVKDFIQTLLHYGGYNEMADILVNLTSLATEIGQLISEGYVLTVLAPNDEAMAKLATEQLSDPGAPEQIMYYHIIPEYQTEESMYNAVRRFGKIRYDTLRLPHKVVAQEADGSVKFGTGEGSAYLFDPDIYTDGRISVQGIDGVLFPLEENEEDSNTQKRTTTTSPLVKVAAKPRRGKLFEVTCNMLGAFGKVC* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0352 448 Gene3D FAS1 domain 34 176 IPR036378 -
Lan9g0352 448 SUPERFAMILY FAS1 domain 235 402 IPR036378 -
Lan9g0352 448 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 9 446 IPR044654 -
Lan9g0352 448 Gene3D FAS1 domain 248 401 IPR036378 -
Lan9g0352 448 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 17 9 446 - -
Lan9g0352 448 Pfam Fasciclin domain 281 400 IPR000782 -
Lan9g0352 448 Pfam Fasciclin domain 42 175 IPR000782 -
Lan9g0352 448 SMART fasc_3 297 402 IPR000782 -
Lan9g0352 448 SMART fasc_3 69 176 IPR000782 -
Lan9g0352 448 ProSiteProfiles FAS1/BIgH3 domain profile. 30 173 IPR000782 -
Lan9g0352 448 ProSiteProfiles FAS1/BIgH3 domain profile. 256 384 IPR000782 -
Lan9g0352 448 SUPERFAMILY FAS1 domain 32 176 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0352 Lan-Chr9 5337708 5341244 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0352 - - gmx:100818575 609.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0352 9 5337708 5341244 Lan5g1063 5 23932292 23935751 LSH
Lan9g0352 9 5337708 5341244 Lan19g0338 19 4104466 4107340 LSH