Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0338 ATGGGTTCCTCTATCTCCATCTTCATCTTTGTTCTTCTAACTCTCTTACCATTTCATTCATCTTCTTTATCATCTTCTCCTCCTCCTTCTTCTTCTTCTGCTCAAATCAATTCAAACTCCATCCTTGTTGCGCTTCTCGATTCTCATTACACAGAACTTTCTGAACTCGTTGAGAAAGCACTCCTACTACAGAAACTTGAAGAGGTTGTTGGAAACTACAACATCACTATCTTTGCACCAAGAAACAATGCATTGGAACGAAACCTTGACCCTGAGTTCAAGCGTTTCTTGCTTGAACCACGAAACCTTAACTCTCTTCAAACGCTTCTCATGTCTCACATTATTCCCACTAGAATAATCGCTGACAACCACTGGCCAACCACCACCACCGCCGCCGCCGCCGTGAGATATGAGACACTGGCTGGTGAACATCATCTTCATTTGAGGGATAATGCTTCCGGCAACAAGACTGTTGACTCCGCCGCCGTGCTCCGGCCGGATGATGTTATCCGCCCAGACGGCGTTATCCACGGCATTGACCAGTTACTGATTCCTAGATCTGTACAAGAAGATTTCAACCGCCGCCGCAACCTCCGCGCCATCGCGGCGGTACTACCGGAGGGAGCACCGCAGGTAGATCCTCGAACCCACCGCTTGAAGAAATCAGCTCCGGTACCCGCCGGAGCGCCTCCTGTTCTCCCGATCTACGATGCGTTAGCTCCAGGTCCGTCAATCGCGCCGGCTCCGGCTCCTGGACCCGGCGGTGCGCGCCACCACTTCAACGGAGAGCGGCAGGTAAAGGATTTCATTCAAACTCTGTTACATTACGGCGGTTACAACGAGATGGCAGATATTCTCGTTAACCTAACGTCGTTAGCGACGGAGATGGGGCGGTTAGTATCGGAGGGTTACGTTTTAACGGTGTTAGCGCCGAACGATGAAGCTATGGCGAAATTAACAACCGAACAATTGAGTGAACCTGGAGCACCCGAACAGATAATGTATTATCATATAATTCCGGAGTATCAAACTGAAGAGAGTATGTATAATGCGGTTAGAAGGTTCGGGAAAATTCGATACGATTCGTTGCGGCTGCCGCATAAGGTGATCGCTCAGGAGGCTGATGGTTCGGTTAAGTTCGGGCATGGTGATGGATCGGCGTATTTGTTCGATCCGGATATTTATACGGATGGAAGGATTTCTGTGCAGGGGATTGATGGGGTTTTGTTCCCTTTGGAGGAGGAGGAGGAAGAGTCTAAGACTGAGAAAACAACAGCAACAACTCCACTTGTTAAAGTTGTTTCTAAACCAAGGAGAGGGAAATTGATTGAAGTGACATGTAGTGTGCTTGGAGCTTTTGGACAAGCCTGCTAA 1374 0.4876 MGSSISIFIFVLLTLLPFHSSSLSSSPPPSSSSAQINSNSILVALLDSHYTELSELVEKALLLQKLEEVVGNYNITIFAPRNNALERNLDPEFKRFLLEPRNLNSLQTLLMSHIIPTRIIADNHWPTTTTAAAAVRYETLAGEHHLHLRDNASGNKTVDSAAVLRPDDVIRPDGVIHGIDQLLIPRSVQEDFNRRRNLRAIAAVLPEGAPQVDPRTHRLKKSAPVPAGAPPVLPIYDALAPGPSIAPAPAPGPGGARHHFNGERQVKDFIQTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTEQLSEPGAPEQIMYYHIIPEYQTEESMYNAVRRFGKIRYDSLRLPHKVIAQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLFPLEEEEEESKTEKTTATTPLVKVVSKPRRGKLIEVTCSVLGAFGQAC* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0338 457 Gene3D FAS1 domain 258 411 IPR036378 -
Lan19g0338 457 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 17 7 456 - -
Lan19g0338 457 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 7 456 IPR044654 -
Lan19g0338 457 Gene3D FAS1 domain 41 186 IPR036378 -
Lan19g0338 457 ProSiteProfiles FAS1/BIgH3 domain profile. 266 394 IPR000782 -
Lan19g0338 457 SUPERFAMILY FAS1 domain 245 412 IPR036378 -
Lan19g0338 457 SMART fasc_3 307 412 IPR000782 -
Lan19g0338 457 SMART fasc_3 76 186 IPR000782 -
Lan19g0338 457 Pfam Fasciclin domain 49 185 IPR000782 -
Lan19g0338 457 Pfam Fasciclin domain 291 410 IPR000782 -
Lan19g0338 457 ProSiteProfiles FAS1/BIgH3 domain profile. 37 183 IPR000782 -
Lan19g0338 457 SUPERFAMILY FAS1 domain 36 186 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0338 Lan-Chr19 4104466 4107340 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0338 - - gmx:100800956 655.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0352 9 5337708 5341244 Lan19g0338 19 4104466 4107340 LSH
Lan5g1063 5 23932292 23935751 Lan19g0338 19 4104466 4107340 LSH