Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1063 ATGGTCTCTTATTCCATATATGGTGTCTCTATTTTACTTCTCTTAACTTTCCTACAATCTCCTTCATTATCTTCTTCTTCTTCTTCTACTCAGATTAATTCTAATTCTATTCTAGTAGCGCTTCTCGATTCTCATTACACCGAACTCGCGGAACTCGTTGAGAAAGCGCTTCTATTACAGAAACTTGAAGACGCTGTTGGAAACTATAATATTACAATCTTTGCACCTAGAAATGAAGCATTGGAACGAAACCTTGACCCTGATTTCAAACGTTTCTTGCTTGAACCACGAAACCTTAACTCTCTTCAAACGCTTCTCATGTCTCACATTATTCCGACAAGAATAGTCGCCGGCGAACACTGGCCGACCGCCGCTGGGAGTGTGGGAGTGAGGCACAGGAGTATTGCCGGTGAGCATTACTTGCATTTGAGAGCGGGGGTTTCCGGTAATAAAACTGTCGATAACGCCGCCGTGCTCCGCCCTGATGATGTTATCCGACCTGACGGTGTTATCCATGGGATTGATCAGTTGTTGGTGCCTAGATCTGTGCAGGAAGATTTTAACCGCCGTCGGAGTCTCCGTTCAATCGCGGCGGTGATACCGGAGGGAGCACCGCAGGTGGATCCTCGAACTAACCGCTTGAAGAAATCAGCTCCGGTTCCCGCCGGCGCGCCTCCGGTTCTTCCGATCTACAACGCGCTAGCTCCAGGACCTTCAATCGCGCCGGCGCCGGCTCCGGGACCTGGCGGTGCGCGGCGGCACTTCAACGGAGAGCGGCAGGTGAAGGATTTCATTCAAACTCTGTTACATTACGGTGGTTACAATGAGATGGCGGATATTCTCGTTAACCTAACGTCGTTAGCGACGGAGATGGGGCGGTTGGTGTCGGAGGGTTACGTTTTAACGGTGTTAGCGCCGAACGACGAAGCGATGGCGAAGCTAACGACCGAGCAGTTAAGCGAACCAGGGGCACCGGAGCAGATCATGTATTATCATATAATTCCGGAGTATCAAACTGAAGAGAGTATGTATAATGCGGTTAGAAGGTTCGGGAAGATTCGATACCATACGTTGCGGCTGCCGCATAAGGTGGTGGCTCAGGAGGCTGATGGTTCGGTTAAATTCGGGCTTGGTGATGAGTCTGCTTATTTGTTTGATCCTGATATTTATACAGATGGGAGGATTTCTGTGCAGGGGATTGATGGAGTTTTGTTCCCTTTGGAGGAGGAAGAAACTAACACTGAGAAAACAACAACAACAACAACTCCACTTGTTAAAGTTGCTGCTAAGCCAAGAAGAGGGAAATTGCTTGAAGTGACATGTAATATGCTTGGAGCTTTTGCACAAGTCTGCTAA 1356 0.4838 MVSYSIYGVSILLLLTFLQSPSLSSSSSSTQINSNSILVALLDSHYTELAELVEKALLLQKLEDAVGNYNITIFAPRNEALERNLDPDFKRFLLEPRNLNSLQTLLMSHIIPTRIVAGEHWPTAAGSVGVRHRSIAGEHYLHLRAGVSGNKTVDNAAVLRPDDVIRPDGVIHGIDQLLVPRSVQEDFNRRRSLRSIAAVIPEGAPQVDPRTNRLKKSAPVPAGAPPVLPIYNALAPGPSIAPAPAPGPGGARRHFNGERQVKDFIQTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTEQLSEPGAPEQIMYYHIIPEYQTEESMYNAVRRFGKIRYHTLRLPHKVVAQEADGSVKFGLGDESAYLFDPDIYTDGRISVQGIDGVLFPLEEEETNTEKTTTTTTPLVKVAAKPRRGKLLEVTCNMLGAFAQVC* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1063 451 SUPERFAMILY FAS1 domain 240 407 IPR036378 -
Lan5g1063 451 ProSiteProfiles FAS1/BIgH3 domain profile. 33 178 IPR000782 -
Lan5g1063 451 SMART fasc_3 72 181 IPR000782 -
Lan5g1063 451 SMART fasc_3 302 407 IPR000782 -
Lan5g1063 451 Pfam Fasciclin domain 286 362 IPR000782 -
Lan5g1063 451 Pfam Fasciclin domain 45 180 IPR000782 -
Lan5g1063 451 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 3 449 IPR044654 -
Lan5g1063 451 ProSiteProfiles FAS1/BIgH3 domain profile. 261 404 IPR000782 -
Lan5g1063 451 Gene3D FAS1 domain 253 406 IPR036378 -
Lan5g1063 451 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 17 3 449 - -
Lan5g1063 451 Gene3D FAS1 domain 37 181 IPR036378 -
Lan5g1063 451 SUPERFAMILY FAS1 domain 35 181 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1063 Lan-Chr5 23932292 23935751 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1063 - - gmx:100818575 625.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g1063 5 23932292 23935751 Lan5g1063 5 23932292 23935751 ECH
Lan9g0352 9 5337708 5341244 Lan5g1063 5 23932292 23935751 LSH
Lan5g1063 5 23932292 23935751 Lan19g0338 19 4104466 4107340 LSH