Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1924 ATGAATCCTCCCCTTGTTTCAAAAACCATTCTTTCTAACCCATTTCATTCCAAAATCAACACTTCTTCTCCAATGAAGGATGCCCATGTTTCAAAAACCAATCTTTCTAATTCTACTCCATGCTTTTCTGCACTATCTTCAAGTTCTAGCAATAACAGCATTAGTTGTAGTAACAGTGAAACCGATGAAAGCCCTCTTTCCTCTCAACGTTTCTCAATCCAGAATGTCAACTATCAATTCTCAACAAAATGTATTAGCATGCCCAATTCACATTCACATCGATCCTTAGCTGTTCTTTCAGGCCATGTTGGTCCTGTTTCATGCTTAGCCGTATGTGGAGAATTTATACTAAGTGCTTCCCAGGGAAGAGACATCATAGTGTGGCAAAAACCAGATATGAGGTTTTTCGCAAAGTTCGGCCATGGCGATGGGTCTGTCAAAGCACTTGTATCCATTGGGAACAAGGTCTTCACAGCACACCAAGATAGCAGGATCAGAGTTTGGAAAGTTTCAAGGAGTTCAGAGAATGTTTTCAAACTTGTTGATACTCTTCCAACAACAAAGGACTATTGGGGGAAATTCATGAAGCAGAGCAATTATGTTCAAACAAGGAGGCACCACAAGCATTTATGGATTGAACATGCTGATAGCATTTCTTGCTTGACTGTTAATAATGGTTTGATTTATTCAGGTTCTTGGGATAAGACCCTTAAGGTTTGGAGGCTCTCGGATTTGAAGTGTTTGGAGTCAATTAAGGCGCACGATGATGCTATTAATGGATTGGCAGCATGTAAAGGGATTGTGTATTCGGCTTCCGCGGATGGAAAGATTAAAGCTTGGGGGAAAGAAGGGAAGAAAGATTCACATTGCTTAAAAGGGGTACTAGAGGGTCACAAAGATGTTTCTTTTAATTCTGTGGTTGTTTCTGATGATGGGAAATGGGTTTATGGAGGGGGTTCTGATGGTTTTGTTATAGGGTGGGAAGGGAATGGGAGTTTTGAAAATTGGAAACTTGTTTCTGAGACAAAGGCACATAACATGGCTGTTTTGAGCATGTGCCTAATGGGAGGGTTTTTGTGTAGTGGCTCAGCTGATAAAAACATTGGTATTTGGAAGAGAGAGGCCTTTGGGAAGCTTTGTAAAGTTGATGTTATAAGTGGTCATGAAGGGCCAGTGAAATGTTTGCAAGCCTCATCAAATAGAATTGATGGTGGGTTTATGCTCTATAGTGGAAGCCTTGATAGAAGTGTGAGAGTTTGGTGGGTTCCAAGGAATAATAATAATGCACAAGTAGAAGAAGAAAACTCTCCTGCAACACTTAGCACATTGAACCAATCCATCATCTCATGTTAG 1353 0.405 MNPPLVSKTILSNPFHSKINTSSPMKDAHVSKTNLSNSTPCFSALSSSSSNNSISCSNSETDESPLSSQRFSIQNVNYQFSTKCISMPNSHSHRSLAVLSGHVGPVSCLAVCGEFILSASQGRDIIVWQKPDMRFFAKFGHGDGSVKALVSIGNKVFTAHQDSRIRVWKVSRSSENVFKLVDTLPTTKDYWGKFMKQSNYVQTRRHHKHLWIEHADSISCLTVNNGLIYSGSWDKTLKVWRLSDLKCLESIKAHDDAINGLAACKGIVYSASADGKIKAWGKEGKKDSHCLKGVLEGHKDVSFNSVVVSDDGKWVYGGGSDGFVIGWEGNGSFENWKLVSETKAHNMAVLSMCLMGGFLCSGSADKNIGIWKREAFGKLCKVDVISGHEGPVKCLQASSNRIDGGFMLYSGSLDRSVRVWWVPRNNNNAQVEEENSPATLSTLNQSIISC* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1924 450 Gene3D - 24 192 IPR015943 GO:0005515
Lan8g1924 450 ProSiteProfiles Trp-Asp (WD) repeats profile. 385 420 IPR001680 GO:0005515
Lan8g1924 450 SUPERFAMILY WD40 repeat-like 94 427 IPR036322 GO:0005515
Lan8g1924 450 PANTHER OS01G0946100 PROTEIN 32 436 - -
Lan8g1924 450 SMART WD40_4 132 169 IPR001680 GO:0005515
Lan8g1924 450 SMART WD40_4 335 372 IPR001680 GO:0005515
Lan8g1924 450 SMART WD40_4 204 241 IPR001680 GO:0005515
Lan8g1924 450 SMART WD40_4 288 328 IPR001680 GO:0005515
Lan8g1924 450 SMART WD40_4 92 129 IPR001680 GO:0005515
Lan8g1924 450 SMART WD40_4 244 281 IPR001680 GO:0005515
Lan8g1924 450 SMART WD40_4 378 421 IPR001680 GO:0005515
Lan8g1924 450 Pfam WD domain, G-beta repeat 383 420 IPR001680 GO:0005515
Lan8g1924 450 Pfam WD domain, G-beta repeat 293 325 IPR001680 GO:0005515
Lan8g1924 450 Pfam WD domain, G-beta repeat 211 240 IPR001680 GO:0005515
Lan8g1924 450 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 32 436 IPR045182 -
Lan8g1924 450 Gene3D - 195 450 IPR015943 GO:0005515
Lan8g1924 450 CDD WD40 95 420 - -
Lan8g1924 450 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 385 420 - -
Lan8g1924 450 ProSiteProfiles Trp-Asp (WD) repeats profile. 211 250 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1924 Lan-Chr8 25299783 25301454 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1924 201 420 Miscellaneous Gene Families AT5G08390 24.561 2.46e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1924 - - lang:109353648 905.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0026 7 138642 140557 Lan8g1924 8 25299783 25301454 LSH
Lan8g1924 8 25299783 25301454 Lan13g0060 13 330888 332928 LSH