Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0060 ATGAAAATTAACCTTCTTCTATCAAAATCCATTCTTTTCAACCCATTTCATTCAAAATTCAATCTTTCTTCTCCAATGAATAACGATTCCTCTGTTTTAAAAGATTTAATGAACTCCCCTGTTTCAAAAACTAAACTTCATAATTCCCCTGCTTCAGAAACCACACTTTCGTTTCTATTAGATTCCTCTGTTTCAAAAGACCCAATGAACTCCACTGTTTCAATAACCAAACTTTATATTCTCACTGATTCTCTTGTTTCAAAACACCCAAACCCAATTAATTCACCAGTTTCAAAAAGCAATCTTTCTTCAACAATGAATTCCCCTGTTCCAAAAGACTCAATGAGCAATTCTGTTTCAAGTTCTAGCAATAGCAGCAACATTAGTTGTAGCAACAGCGAAACCGATGAAAGTCCTCTTTCCTCTAAACATTTCTCAATCCAAGTTGTAAAATATCAAATCCCAACAAAATGCATTAGCATACCCAATTCACATTCACAACAATCCTTAGCTGTTCTTTCAGGCCATTCTGGTTCTGTTTCATGCTTAGCCGTATGTGGAGAATTCATACTAAGTGCTTCACAGGGAAAAGACATCATAGTGTGGCAACAACCAGATTTGAGGTTTTTCGCGAAGTTCGGCCATGGAGATGGTTCTGTCAAAGCACTAGCATCCGTTGGGAACAAAGTTTTCACAGCACACCAAGATAGCAAGATCAGGGTTTGGAAAGTTTCAAGGAGTTCAGAGAATGTTTTCAAACTTGCTGATACTCTTCCAACAACAAAAGACTATTGGGGCAAATTCATGAAGAAAAGCAATTATATTCAAACAAGGAGGCACCACAAGCGTTTGTGGATTGAACATGTTGATAGTATTTCTTGTTTGAGTGTTTATAATGGTTTGATTTATTCAGGTTCTTGGGATAAGACCCTTAAGGTTTGGAGGCTTTCGGATTTGAAGTGTTTGGAGTCAATTAAGGCTCATGATGATGCTATCAATGGATTGGTATCATGTAAAGGGATTCTCTATTCCGCTTCGGCGGACGGAAAGATTAAAGCTTGGGGGAAAGAAGGGAAGAAAGATTCACATTGCTTAAAAGGGGTACTAGAGGGTCATAAAGATGTTTCTTTCAATTCTGTGGTTGTTTCTGATGATGGGAAATGGGTTTATGGAGGTTGTTCTGATGGTTTTGTTATAGGGTGGGAAAAGAATTGGAGTTATGAAAGTTGGAAACTTGTTTCTGAGACTAAGGCACATGACATTTCTGTTTTGTGTATGTGCCTAATGGGAGAGTTTTTGTGTAGTGGATCAGCTGATAAAAACATTGGTATTTGGAAGAGAGAGGATTTTGGTAAGCTTTGTAAAATTGGTGTCTTAAGTGGCCATGCAGGACCAGTGAAATGCTTGCAAGCCTCATCATCTAATAGAATTGGTGATGGGTTTATGCTCTATAGTGGAAGCCTTGATAGAAGTGTGAGAGTTTGGTGGGTTCCAAGGTATAGTGATAATAATACACAAGTAGAAGAAGATAACTCTACAACACTTAGCACAATGAACCAATCCATAATCTCATGTTAG 1578 0.3771 MKINLLLSKSILFNPFHSKFNLSSPMNNDSSVLKDLMNSPVSKTKLHNSPASETTLSFLLDSSVSKDPMNSTVSITKLYILTDSLVSKHPNPINSPVSKSNLSSTMNSPVPKDSMSNSVSSSSNSSNISCSNSETDESPLSSKHFSIQVVKYQIPTKCISIPNSHSQQSLAVLSGHSGSVSCLAVCGEFILSASQGKDIIVWQQPDLRFFAKFGHGDGSVKALASVGNKVFTAHQDSKIRVWKVSRSSENVFKLADTLPTTKDYWGKFMKKSNYIQTRRHHKRLWIEHVDSISCLSVYNGLIYSGSWDKTLKVWRLSDLKCLESIKAHDDAINGLVSCKGILYSASADGKIKAWGKEGKKDSHCLKGVLEGHKDVSFNSVVVSDDGKWVYGGCSDGFVIGWEKNWSYESWKLVSETKAHDISVLCMCLMGEFLCSGSADKNIGIWKREDFGKLCKIGVLSGHAGPVKCLQASSSNRIGDGFMLYSGSLDRSVRVWWVPRYSDNNTQVEEDNSTTLSTMNQSIISC* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0060 525 SMART WD40_4 452 496 IPR001680 GO:0005515
Lan13g0060 525 SMART WD40_4 409 446 IPR001680 GO:0005515
Lan13g0060 525 SMART WD40_4 362 402 IPR001680 GO:0005515
Lan13g0060 525 SMART WD40_4 166 203 IPR001680 GO:0005515
Lan13g0060 525 SMART WD40_4 206 243 IPR001680 GO:0005515
Lan13g0060 525 SMART WD40_4 318 355 IPR001680 GO:0005515
Lan13g0060 525 SMART WD40_4 278 315 IPR001680 GO:0005515
Lan13g0060 525 SUPERFAMILY WD40 repeat-like 167 499 IPR036322 GO:0005515
Lan13g0060 525 MobiDBLite consensus disorder prediction 92 139 - -
Lan13g0060 525 Pfam WD domain, G-beta repeat 286 314 IPR001680 GO:0005515
Lan13g0060 525 Pfam WD domain, G-beta repeat 456 495 IPR001680 GO:0005515
Lan13g0060 525 Pfam WD domain, G-beta repeat 168 202 IPR001680 GO:0005515
Lan13g0060 525 Pfam WD domain, G-beta repeat 367 399 IPR001680 GO:0005515
Lan13g0060 525 ProSiteProfiles Trp-Asp (WD) repeats profile. 285 324 IPR001680 GO:0005515
Lan13g0060 525 Gene3D - 103 271 IPR015943 GO:0005515
Lan13g0060 525 Gene3D - 272 525 IPR015943 GO:0005515
Lan13g0060 525 PANTHER OS01G0946100 PROTEIN 115 513 - -
Lan13g0060 525 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 115 513 IPR045182 -
Lan13g0060 525 CDD WD40 169 495 - -
Lan13g0060 525 ProSiteProfiles Trp-Asp (WD) repeats profile. 459 495 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0060 Lan-Chr13 330888 332928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0060 289 525 Miscellaneous Gene Families AT5G08390 25.514 3.19e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0060 - - lang:109353136 761.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0026 7 138642 140557 Lan13g0060 13 330888 332928 LSH
Lan8g1924 8 25299783 25301454 Lan13g0060 13 330888 332928 LSH