Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1839 ATGAAGGTTGAAAACACAAATATGAGTCATGTTCTTCTGCTTTCTGTTATCTTTTTCGCAGGTTTTGAGGCCCAAGCTTTGTCTTATGATTATTCTGCCAACGTTGAATGTTTGGCACAACCTCAGAAGCCTCAATATAATGGAGGAATCATAAAAAACCCAGAAATGAATAATGGATTACAAGGTTGGACTGCATTTGCTGGTGCACAAATAGAGCAGAGAGAATCATCTGGTAACAAATATGTGGTAGCCCATAAAAGGAAACAAGCTTATGATAGTGTCTCCCAAAAAATTAACCTTCAAATGGGGACACATTATACTTTATCTGCTTGGATACAAGTAACTGGAAAGAATGTTCCAGTAATAGCTACAGTCAAAACAAGTAAAGGGTACAACCTTGCTGGTGCTATTTTTGCTGAGTCAAATTGTTGGTCCATGCTTAAGGGTGGTCTCACAGCAGATACATCAGGACCAGCTGAACTCTATTTTGAGAGCAATAATACATCCGCGGATATTTGGATCGACAGCGTGTCCTTACAGCCATTCACAGAAAAGGAATGGAACTCTCATCAAGTTCAGAGCATTGATAAGGCACGCAAGAGAAAGATATTAGTGAAAGCAGTTGATAAAGAAGGGAAACCTATAAGAAGTGCTAGTATATCTATTGTACAGAAGAAATCAGGATTTCCAATTGGAAGTGCAATAACTAATCACATACTAAAAAATAAAGCATACCAACAATGGTTCACTTCTAGGTTCAGTGTTGCAACATTTGCAAATGAAATGAAGTGGTATAGCACTGAGTCTGTGCAAGGCAAAGAGAACTATGCTGATGCTGATTCCATGTTACAGTTTGCTAAGCAAAACAACATTAGTGTTAGAGGACACAATGTATTTTGGGATGATCCTAATTACCAACCTAGTTGGGTTTCTGCACTATCCCCTGAGAAGCTTAAATCAGCAGTTCAAAAGAGGATTCAATCTGTTGTAACAAGATACAAGGGCCAGCTTATTCACTGGGATGTTAACAATGAAAACATGCACTTTTCATTCTATGAGAGTAAACTTGGAAAAGACTTTTCAGGGTGGGTTTTCAATGAGGTTAACAAGATTGATCCAAAAGTAACTTTATTCTTGAATGATTATAATACTATTGAAGAAATTAGAGACAGTTTAGTAACACCTTCAAAGTATGTCCAAAAAGTCAAAGAGATCAAAAGCTATCCTGGGAATAATGGATTAACAATAGGGATTGGTCTTGAGTCTCATTTCACTAATGTTCCTAACATTCCTTACATGAGATCAACCATTGATACCCTTGCTGCAACTGGTTCCCCTGTTTGGATTACTGAAATAGATGTTGCAAACCAACCCAAACAGGCAGAGTATTTTGAAGAGGTTCTGAGAGAAGCACACTCTCACCCAAAGGTTGAGGGTATTGTAATGTGGACAGGGTGGTCACCAAAGGGTGAATGCTATAGAATTTGTTTGGTTGATACAAATTTCAAGAACTTGCGTGGTGGAGATGTTGTGGACAAATTGCTTCATGAGTGGAGTTCCACACAAGTATCAGGGATCACTAACCAAAATGGGATACTTGAGGCCACACTTTTTCATGGTCACTATGATGTCACAATCACTCACCCTACTAAGAAGAATAATAACTTCACTCACCCCATGCAAGTGCTTCCAATAAATCAATCCAAGAAAACAACAACCCAACTCATACAACTTTCTATATAA 1743 0.3815 MKVENTNMSHVLLLSVIFFAGFEAQALSYDYSANVECLAQPQKPQYNGGIIKNPEMNNGLQGWTAFAGAQIEQRESSGNKYVVAHKRKQAYDSVSQKINLQMGTHYTLSAWIQVTGKNVPVIATVKTSKGYNLAGAIFAESNCWSMLKGGLTADTSGPAELYFESNNTSADIWIDSVSLQPFTEKEWNSHQVQSIDKARKRKILVKAVDKEGKPIRSASISIVQKKSGFPIGSAITNHILKNKAYQQWFTSRFSVATFANEMKWYSTESVQGKENYADADSMLQFAKQNNISVRGHNVFWDDPNYQPSWVSALSPEKLKSAVQKRIQSVVTRYKGQLIHWDVNNENMHFSFYESKLGKDFSGWVFNEVNKIDPKVTLFLNDYNTIEEIRDSLVTPSKYVQKVKEIKSYPGNNGLTIGIGLESHFTNVPNIPYMRSTIDTLAATGSPVWITEIDVANQPKQAEYFEEVLREAHSHPKVEGIVMWTGWSPKGECYRICLVDTNFKNLRGGDVVDKLLHEWSSTQVSGITNQNGILEATLFHGHYDVTITHPTKKNNNFTHPMQVLPINQSKKTTTQLIQLSI* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1839 580 SUPERFAMILY (Trans)glycosidases 214 522 IPR017853 -
Lan8g1839 580 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 217 514 IPR001000 GO:0004553|GO:0005975
Lan8g1839 580 SMART glyco_10 262 514 IPR001000 GO:0004553|GO:0005975
Lan8g1839 580 Pfam Glycosyl hydrolase family 10 225 483 IPR001000 GO:0004553|GO:0005975
Lan8g1839 580 Gene3D - 38 183 - -
Lan8g1839 580 SUPERFAMILY Galactose-binding domain-like 47 180 IPR008979 -
Lan8g1839 580 Gene3D Glycosidases 217 506 - -
Lan8g1839 580 Pfam Carbohydrate binding domain 49 166 IPR003305 GO:0016798
Lan8g1839 580 PANTHER GLYCOSYL HYDROLASE FAMILY 10 PROTEIN 17 571 - -
Lan8g1839 580 PANTHER GLYCOSYL HYDROLASE 17 571 IPR044846 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1839 Lan-Chr8 24778844 24782022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1839 23 557 Glycoside Hydrolase AT4G33840 56.192 0.0 652
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1839 - - gmx:100775272 798.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0098 7 524842 527951 Lan8g1839 8 24778844 24782022 LSH
Lan8g1839 8 24778844 24782022 Lan13g0162 13 981536 986935 LSH