Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0162 ATGAGCCCCTTCCTTCTTCTTTGTGTTATTCTTTTCACAGGTTTTGAAGTGAAAGCTTTACCCTATGATTACTCTGCCATAAGTGAATGTTTGAAACAACCTCAGAAGCCTCAATATAATGGAGGAATCATCAAAAACCCAGAACTGAACAATGGACTAGAAGGTTGGACTGTATTTGGAAATGCAAAAATAGAACAGAGAGAATCATCATGCAACAAATATGTTGTAGCCTATAACAGGAAGCAACCTTCAGATTCTGTCTCACAAAAGATTAACCTTCAAAAGGGGATGCATTATACTCTATCTGGTTGGATACAAGTGACTGGGAGCAATGTTCTAGTAAAAGCAACACTCAAAACAAGCAAAGGGTATACCCTTGCTGGTGCCACTTATGCTGAGTCACATTGTTGGTCTATGATTAAGGGTGGTTTCACAGCAGATACATCAGGACCAGCTGAGCTATATTTTGAGAGCAAAGATACTTGTGTGGATATTTGGATTGACAATGTGTCCTTACAACCATTCACAGAAGAGGAATGGAAGTCTCATCATGTTAAGAGTATTGAGAAGGCACGCAAGAGGAATGTATTACTAAAAGTAGCTCATAAACAAGGGAGTTCGGTAGGAAATGTGGCCATATCTATTAAACAGAAGAGGTCAGGGTTTCCATTTGGAAGCGCCATAAACCATAATATCCTGAACAACACTGCATACCAAAACTGGTTCGCTTCTAGGTTCACAGTTACCACATTTGAAAATGAACTGAAGTGGTATTTCACTGAAGTTGTACAAGGGAAAGAGAACTATGAAGTTGCTGATTCCATGTTACAGTTCGCAAAGCAACACAAGATTGGTGTTAGAGGCCACTGTGTATTTTGGGATGATCCTAAGTACCAACCTAGTTGGGTTCCTTCACTCTCCCCATACCAACTTAAGTCGGCCACTCAAAAGAGGATTCTATCTGTTGTAAAAAGATACAAGGACAAATTTATTGCATGGGATGTTGTTAATGAAAACCTTCACTTTTCATTCTTTGAAAGTAAACTTGGACAACAATTTTCATCCAAGGTTTTCAGTGTGGTTCACAAAATTGATCCAAGAGTCACTTTATTCTTGAATGAGTATAATACGGTCGAAGAAGAGACAGACAGTTCAGTAAATGTGGCAAAGTATATTCGGAAGCTCAGACAGATCAAAAGCTATTCTACGTCTAAGGGAATTAAAATTGGGGTTGGTCTTGAATCTCATTTCACTCACACTCCAAACCTGCCTTACATGAGAGCTTCCATTGATATGCTTGCCTCCACTGGTTCACCTGTTTGGATTACTGAATTAGATGTTGCAAACCAACCGAAGCAGGCAGAGTACTTTGAACAGGTTTTAAGAGAAGCACACTCTCACCCAAAGGTACAAGGCATTGTAATGTGGACAACATGGTCACCAAATGGTGAATGCTATAGGATTTGCCTGGTTGATAAGAACTTCAAAAACTTGCCTGGAGGGGATGTTGTGGACAAATTGCTTCGCGAGTGGGGTTCCAAACCAGTATCAGTAATTACAAACCAAAATGGAACACATGAGGTAAACCTTTTCCATGGCGATTACGAAGTCACAATCAGCGACCCGGCCAACACGGATCACCACTTCACTCAGCAAGTGCAAGTGCTTCCAGCAGATCAACCAGAGAAAACAACAACTCAAGTATTACAAATTTCTATTTAG 1722 0.4013 MSPFLLLCVILFTGFEVKALPYDYSAISECLKQPQKPQYNGGIIKNPELNNGLEGWTVFGNAKIEQRESSCNKYVVAYNRKQPSDSVSQKINLQKGMHYTLSGWIQVTGSNVLVKATLKTSKGYTLAGATYAESHCWSMIKGGFTADTSGPAELYFESKDTCVDIWIDNVSLQPFTEEEWKSHHVKSIEKARKRNVLLKVAHKQGSSVGNVAISIKQKRSGFPFGSAINHNILNNTAYQNWFASRFTVTTFENELKWYFTEVVQGKENYEVADSMLQFAKQHKIGVRGHCVFWDDPKYQPSWVPSLSPYQLKSATQKRILSVVKRYKDKFIAWDVVNENLHFSFFESKLGQQFSSKVFSVVHKIDPRVTLFLNEYNTVEEETDSSVNVAKYIRKLRQIKSYSTSKGIKIGVGLESHFTHTPNLPYMRASIDMLASTGSPVWITELDVANQPKQAEYFEQVLREAHSHPKVQGIVMWTTWSPNGECYRICLVDKNFKNLPGGDVVDKLLREWGSKPVSVITNQNGTHEVNLFHGDYEVTISDPANTDHHFTQQVQVLPADQPEKTTTQVLQISI* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0162 573 Pfam Carbohydrate binding domain 42 159 IPR003305 GO:0016798
Lan13g0162 573 PANTHER GLYCOSYL HYDROLASE 4 550 IPR044846 GO:0004553|GO:0005975
Lan13g0162 573 Gene3D Glycosidases 209 516 - -
Lan13g0162 573 SUPERFAMILY (Trans)glycosidases 210 515 IPR017853 -
Lan13g0162 573 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 205 507 IPR001000 GO:0004553|GO:0005975
Lan13g0162 573 PANTHER ENDO-1,4-BETA-XYLANASE A-LIKE 4 550 - -
Lan13g0162 573 SMART glyco_10 255 508 IPR001000 GO:0004553|GO:0005975
Lan13g0162 573 Pfam Glycosyl hydrolase family 10 220 478 IPR001000 GO:0004553|GO:0005975
Lan13g0162 573 ProSitePatterns Glycosyl hydrolases family 10 (GH10) active site. 437 447 IPR031158 -
Lan13g0162 573 Gene3D - 31 176 - -
Lan13g0162 573 SUPERFAMILY Galactose-binding domain-like 40 173 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0162 Lan-Chr13 981536 986935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0162 16 542 Glycoside Hydrolase AT4G33840 56.792 0.0 648
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0162 - - gmx:100775272 757.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan13g0162 13 981536 986935 Lan13g0162 13 981536 986935 ECH
Lan7g0098 7 524842 527951 Lan13g0162 13 981536 986935 LSH
Lan8g1839 8 24778844 24782022 Lan13g0162 13 981536 986935 LSH