Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1730 ATGATTTTTTCAAGAATTGGGCGATCCCTTTCTCGTTCTTCTCGCGCTAGAAATTTGTTGACGGGCGATGGGAGATTGGGAACCCTAGTTGGAGCTTCACGTAGGAACGGTGAATCCTTTTCCGATGGAGGAGTGTCTTTGAGGGGTTACATAGCTCCTGCCAACAATGGCTTCGATTCCAATTTGTCTGATTTTAAGTCTATTGGAGCAAACCCTAGGCTCCTTCGCTTGTTTTCCAGTGAAGCCCCTAAGAAAAAGAATTATGAGAACTTCTACCCCAAAGAAAAGAAGGAAGTTCCGAAGGGAGACGATTCGAAACAGGAATCTAAAGACGACTCAAACACAAAGACAGACGATAATGAAAATTTGAAAGATTTTTTCATGAAGCAATTTCAAAACATATTACCTTTATTGGTGTTGGGGGTATTTCTTACGTTTTCACTCGGTCCTCGCGAACAACAGCAGATCAGCTTTCAGGAGTTTAAAAATAAGCTTTTGGAACCAGGCTTAGTAGACCATATTGTTGTTACAAATAAGTCAGTTGCCAAAGTATATGTAAGGAGCTCTCCCCGTAACCCAGCAGACAGTGAAGTTGTTCAAGGGACCCTCCCTGGACAAAGAACTGGTGGCCAGTATACGTACTATTTCAATATTGGAAGTGTTGAGTCTTTTGAGGAGAAGTTAGAGGAAGCTCAAGAAGCGCTAGGCATTGACCCTCATGATTACATTCCTGTTACATATTCTTCTGAAATGGTTTGGTTCCAGGAGTTGTTGAGATTTGCTCCTACACTGATGCTTTTGGGAACTCTTCTCTATATGGGAAGGAAAATGCAAGGTGGACTTGGTGTTGGTGGTCCTGGTGGTGGTAAGGGCGGTCGTGGCATATTCAATATAGGAAAAGCCCATGTTACCAAAGTAGACAAAAATGCTAAAAACAAGGTTTTTTTCAAAGATGTCGCTGGCTGTGATGAGGCAAAGCAAGAAATTATGGAGTTTGTCCACTTCCTCAAGAACCCAAAGAAATATGAAGAACTTGGCGCGAAGATTCCAAAAGGTGCTCTTTTGGTGGGTCCTCCTGGCACAGGAAAAACCCTTTTAGCAAAAGCAACTGCAGGGGAATCTGCTGTGCCATTTCTTTCAATTTCTGGTTCAGATTTCATGGAAATGTTTGTCGGTGTTGGACCATCCAGGGTGAGAAACTTGTTTCAGGAAGCAAGGCAGTGTGCTCCCAGTATAATATTTATTGATGAGATTGATGCAATTGGTCGAGCAAGGGGACGTGGAGGTTTCTCTGGTGCAAATGATGAGCGTGAAAGTACTTTGAATCAATTGTTGGTGGAGATGGATGGTTTTGGAACCACTGCTGGGGTTGTTGTACTTGCAGGAACAAATAGACCTGATATCTTAGACAAAGCTCTGCTTAGGCCTGGGCGATTTGACCGCCAGATAACCATTGACAAGCCTGATATTAAAGGCCGTGACCAGATATTTCAGATCTACTTGAAAAAGATCAAACTTGACCATGAACCTTCATATTTTTCACAAAGGCTTGCAGCACTTACCCCAGGATTTGCTGGTGCTGACATTGCTAATGTTTGTAATGAAGCTGCTCTGATTGCTGCAAGAGGCGAGAAAACACAAGTCACAATGGAACATTTTGAGTCAGCGATCGATAGGATCATTGGTGGCCTGGAGAAGAGGAACAGGGTAATAAGCAAGCTTGAAAGGCGTACTGTTGCTTATCATGAATCAGGTCATGCTGTTGCTGGCTGGTTCTTGGAACATGCTGAACCTTTATTGAAAGTAACCATAGTTCCTCGTGGCACTGCAGCTCTTGGATTTGCCCAGTATGTTCCAAATGAGAACCTTCTCATGACAAAGGAGCAACTTTTTGATATGACTTGCATGACTCTTGGTGGTCGGGCCGCAGAGCAGGTTCTCATTGGGAGAATCTCAACTGGAGCGCAAAATGATTTGGAAAAAGTGACCAAGATGACATATGCGCAAGTAGCAGTCTATGGTTTTAGCGACAAAGTTGGCCTTCTCTCTTTTCCTCAACGAGAGGACTCGTTTGAGATGTCAAAACCATACAGCAGCAAAACTGCTGCAATCATTGACAATGAAGTGCGCGAATGGGTAGGCAAAGCATATGAAAAAACGGTACAGCTTATTGAGGAACACAAGGAAGAAGTGGCTAAAATTGCAGAGTTGCTGCTTGAAAAAGAGGTGCTTCACCAGGATGACTTACTTCAAGTTCTGGGTGAAAGACCATTCAAGTCTGCTGAACCCACCAATTATGATAGATTCAAACAAGGTTTTGAGGAGGTCGAGGAAAAGATACTAGAAAGCCCTGTCAACGAGTCCGGCGAGAGCGGTGGATCTCCACCATTAGATCCCCAGGTTGTTCCCACATAG 2415 0.4364 MIFSRIGRSLSRSSRARNLLTGDGRLGTLVGASRRNGESFSDGGVSLRGYIAPANNGFDSNLSDFKSIGANPRLLRLFSSEAPKKKNYENFYPKEKKEVPKGDDSKQESKDDSNTKTDDNENLKDFFMKQFQNILPLLVLGVFLTFSLGPREQQQISFQEFKNKLLEPGLVDHIVVTNKSVAKVYVRSSPRNPADSEVVQGTLPGQRTGGQYTYYFNIGSVESFEEKLEEAQEALGIDPHDYIPVTYSSEMVWFQELLRFAPTLMLLGTLLYMGRKMQGGLGVGGPGGGKGGRGIFNIGKAHVTKVDKNAKNKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESAVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKIKLDHEPSYFSQRLAALTPGFAGADIANVCNEAALIAARGEKTQVTMEHFESAIDRIIGGLEKRNRVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLMTKEQLFDMTCMTLGGRAAEQVLIGRISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSFPQREDSFEMSKPYSSKTAAIIDNEVREWVGKAYEKTVQLIEEHKEEVAKIAELLLEKEVLHQDDLLQVLGERPFKSAEPTNYDRFKQGFEEVEEKILESPVNESGESGGSPPLDPQVVPT* 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1730 804 Gene3D - 143 252 - -
Lan8g1730 804 SMART AAA_5 349 489 IPR003593 -
Lan8g1730 804 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 253 753 IPR005936 GO:0004176|GO:0004222|GO:0016020
Lan8g1730 804 Pfam AAA+ lid domain 516 554 IPR041569 -
Lan8g1730 804 PANTHER ATP-DEPENDENT PROTEASE 59 803 - -
Lan8g1730 804 Gene3D - 297 486 IPR027417 -
Lan8g1730 804 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 10, MITOCHONDRIAL-LIKE 59 803 - -
Lan8g1730 804 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 17 788 IPR005936 GO:0004176|GO:0004222|GO:0016020
Lan8g1730 804 MobiDBLite consensus disorder prediction 89 119 - -
Lan8g1730 804 MobiDBLite consensus disorder prediction 781 804 - -
Lan8g1730 804 ProSitePatterns AAA-protein family signature. 457 475 IPR003960 GO:0005524|GO:0016887
Lan8g1730 804 SUPERFAMILY FtsH protease domain-like 570 760 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Lan8g1730 804 CDD AAA 350 487 - -
Lan8g1730 804 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 313 560 IPR027417 -
Lan8g1730 804 Gene3D Peptidase M41 570 771 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Lan8g1730 804 Pfam FtsH Extracellular 134 240 IPR011546 GO:0004176|GO:0004222|GO:0005524|GO:0008270|GO:0016021
Lan8g1730 804 Pfam Peptidase family M41 569 751 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Lan8g1730 804 Pfam ATPase family associated with various cellular activities (AAA) 354 486 IPR003959 GO:0005524|GO:0016887
Lan8g1730 804 Gene3D - 488 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1730 Lan-Chr8 24054588 24061152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1730 1 804 Miscellaneous Gene Families AT2G29080 76.255 0.0 1177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1730 K08956 - gmx:100806656 1271.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0228 7 1416282 1421444 Lan8g1730 8 24054588 24061152 LSH
Lan8g1730 8 24054588 24061152 Lan13g0317 13 2084257 2089311 LSH