Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0317 ATGATTTTTTCAAGGATTGGTCGCTCCCTTTCACGTTCTTCTCGCGCCAGAAAATTGTTGCAGGGCGGTGGTGCCTCATATTCCGACGGAGGAGAAAGGGGATTAGGGTTTTTGAGGGGTTACATTGCTGCTGCTAACAATGGCTTCAATTCCAATTTGTCTGATTTTAAGTCCATTGGAGCAAACCCTAGGCTTCTCCGATTGTTTTCCAGTGAAGTCCCTAAGAAAAAGAATTATGAGAACTTCTACCCCAAGGAAAAGAAGGAAGTTCCAAAGGGAGGTGATTCAAAACAGGAATCTAAAGATGACTCGAACACAAAGACAGATGATCATGCAAATTTGAAAGAGTTTTTCATGAAGCAATTTCAAAACATATTACCTTTATTGATGTTGGGGGTATTCCTTACCTTTTCACTTGGTTCTGACGAACAACAGCAGATCAGCTTTCAGGAGTTTAAGAATAAGCTTTTGGAACCAGGCATAGTAGACCATATTGTTGTTTCAAATAAGTCAGTTGCCAAAGTATATGTAAGGAGATCTCCCCATAACCCAGCAGACAGTGAAGTTGTCCAAGGGACTCTCCCTGGACAAAGAACTGGTGGCCAGTATATGTACTATTTCAATATTGGAAGTGTTGAGTCCTTTGAGGAGAAGCTAGATGAAGCGCAAGAAGCACTAGGCATTGACCCTCATGATTATGTTCCTATTACATATTCTTCTGAGATTGTTTGGTTCCAGGAATTATTGAGATTTGCTCCTACACTGCTACTTTTGGGAACTCTTCTCTATATGGGAAGGAAAATGCAAGGTGGACTTGGTATTGGTGGTCCTGGTAGCGGTAAGGGTGGCCGTGGCATATTTGACATGGGAAAAGCCCCTATTACCAAAGTAGACAAAAATGCCAAAAACAAGGTTTTTTTCAAAGATGTTGCTGGTTGTGATGAGGCAAAGCAAGAAATTATGGAGTTCGTCCACTTCCTTAAGAGCCCAAAGAAATATGAAGAACTCGGTGCAAAAATTCCAAAAGGTGCTCTTTTGGTGGGTCCTCCTGGCACAGGAAAAACCCTTTTAGCAAAAGCAACTGCAGGGGAATCTGGTGTGCCATTTCTTTCTATATCTGGTTCTGAATTCATGGAAATGGTTGTTGGTGTTGGACCGTCTAGGGTGAGAAACTTGTTTCAGGAAGCAAGGCAGTGTGCTCCCAGTATAATATTTATTGATGAGATTGATGCAATTGGTCGAGCAAGGGGACGTGGAGGTCTTTCTGGTGGAAATGATGAGCGTGAAAGCACATTGAATCAGTTGTTGGTGGAGATGGATGGTTTTGGAACCACTGCTGGAGTTGTTGTACTTGCAGGAACAAATAGACCCGATATCTTAGATAAAGCTCTACTTAGGCCTGGGCGATTTGACCGCCAGGTAACCATTGATGAGCCTGATATTAATGGCCGTGACCAGATATTTCAGATCTACTTGAAAAAGATCAAACTTGACCATGAACCTTCATATTTTTCACAAAGGCTTGCAGCTCTTACCCCGGGATTTGCTGGTGCAGACATTGCTAATGTTTGTAATGAAGCTGCTCTGATAGCTGCAAGAGGTGAGCAAACACAAGTGACAATGGAACATTTTGAGGCAGCTATTGACAGGATCATTGGTGGTCTGGAGAAGAGGAACAGGGTAATAAGCAAGCTTGAAAGGCGTACTGTTGCTTATCATGAATCAGGCCATGCTGTTGCAGGCTGGTTCTTGGAACATGCTGAACCATTATTGAAAGTAACCATAGTTCCTCGTGGCACAGCAGCTCTTGGATTTGCTCAGTATGTTCCAAATGAGAACCTTCTCATGACAAAGGAGCAGCTTTTTGATATGACTTGCATGACTCTTGGTGGCCGGGCTGCTGAGCAGGTTCTCATTGGGAGAATATCAACCGGAGCTCAAAATGACTTGGAAAAGGTGACCAAGATGACGTATGCGCAAGTAGCAGTCTATGGTTTTAGTGACAAAGTTGGCCTTCTCTCTTTCCCTCAGCGAGAGGACTCGTACGAGATGTCAAAACCATACAGCAGTAAGACTGCTGCAATCATTGATAATGAAGTGCGCGAATGGGTAGGCAAAGCATATGAACGAACAATACAGCTTATGGAGGAACACAAGGAACAAGTGGCTATAATTGCAGAGTTGCTTCTTGAAAAAGAGGTGCTTCACCAAGAGGACATGGTTCGAATTTTGGGTGAGCGGCCATTCAAGTCTGCTGAACCCACCAATTATGATAGATTTAAGCAAGGTTTTCAGGAGGACGAGGAGAAGATAATAGAAAAACCTGTCAATGAGCCTGAGGAGAACGGTGGATCTTCACCGTTAGATCCTCTGGTTGTTCCCACATAA 2388 0.433 MIFSRIGRSLSRSSRARKLLQGGGASYSDGGERGLGFLRGYIAAANNGFNSNLSDFKSIGANPRLLRLFSSEVPKKKNYENFYPKEKKEVPKGGDSKQESKDDSNTKTDDHANLKEFFMKQFQNILPLLMLGVFLTFSLGSDEQQQISFQEFKNKLLEPGIVDHIVVSNKSVAKVYVRRSPHNPADSEVVQGTLPGQRTGGQYMYYFNIGSVESFEEKLDEAQEALGIDPHDYVPITYSSEIVWFQELLRFAPTLLLLGTLLYMGRKMQGGLGIGGPGSGKGGRGIFDMGKAPITKVDKNAKNKVFFKDVAGCDEAKQEIMEFVHFLKSPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSEFMEMVVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGLSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQVTIDEPDINGRDQIFQIYLKKIKLDHEPSYFSQRLAALTPGFAGADIANVCNEAALIAARGEQTQVTMEHFEAAIDRIIGGLEKRNRVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLMTKEQLFDMTCMTLGGRAAEQVLIGRISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSFPQREDSYEMSKPYSSKTAAIIDNEVREWVGKAYERTIQLMEEHKEQVAIIAELLLEKEVLHQEDMVRILGERPFKSAEPTNYDRFKQGFQEDEEKIIEKPVNEPEENGGSSPLDPLVVPT* 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0317 795 Gene3D - 289 477 IPR027417 -
Lan13g0317 795 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 10, MITOCHONDRIAL-LIKE 31 794 - -
Lan13g0317 795 PANTHER ATP-DEPENDENT PROTEASE 31 794 - -
Lan13g0317 795 MobiDBLite consensus disorder prediction 80 108 - -
Lan13g0317 795 ProSitePatterns AAA-protein family signature. 448 466 IPR003960 GO:0005524|GO:0016887
Lan13g0317 795 Gene3D - 133 242 - -
Lan13g0317 795 Pfam ATPase family associated with various cellular activities (AAA) 345 477 IPR003959 GO:0005524|GO:0016887
Lan13g0317 795 Pfam AAA+ lid domain 507 546 IPR041569 -
Lan13g0317 795 SMART AAA_5 340 480 IPR003593 -
Lan13g0317 795 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 244 744 IPR005936 GO:0004176|GO:0004222|GO:0016020
Lan13g0317 795 CDD AAA 341 478 - -
Lan13g0317 795 Gene3D Peptidase M41 561 762 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Lan13g0317 795 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 304 551 IPR027417 -
Lan13g0317 795 Pfam Peptidase family M41 560 743 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Lan13g0317 795 MobiDBLite consensus disorder prediction 760 777 - -
Lan13g0317 795 Pfam FtsH Extracellular 125 231 IPR011546 GO:0004176|GO:0004222|GO:0005524|GO:0008270|GO:0016021
Lan13g0317 795 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 15 782 IPR005936 GO:0004176|GO:0004222|GO:0016020
Lan13g0317 795 SUPERFAMILY FtsH protease domain-like 561 751 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Lan13g0317 795 MobiDBLite consensus disorder prediction 751 795 - -
Lan13g0317 795 Gene3D - 479 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0317 Lan-Chr13 2084257 2089311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0317 1 795 Miscellaneous Gene Families AT2G29080 74.939 0.0 1157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0317 K08956 - gmx:100806656 1242.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0228 7 1416282 1421444 Lan13g0317 13 2084257 2089311 LSH
Lan8g1730 8 24054588 24061152 Lan13g0317 13 2084257 2089311 LSH