Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g0228 ATGATTTTTTCAAGGATTGGGTCCTCCCTCTCGCGTTCTTCTCGCGCCAGAAATTTGTTGCAGGGGAATGGGAAATTCGGAACCCTAGTCGGAGCGCTGCGTATAAATGGTGCCTCATATTCCGATGGAGGAGAAAATGGATTAGGTTTTTTGAGGGGTTACATAGCTCCTGCCAGCAATGGCTTCAATTCCAATTTCTCTGATTTGAAGTCAATCGGAGAAAGCCGTAGGCTTCTCCGATTGTTTTCCAGTGAAGCTCCTAAGAAAAAGAATTATGAAAACTTTTTCCCTAAGGAAAAGAAGGAAGTTCCAAAGAGAGACGAATCAAAACAGGAATCTAAAGATGACTCGAAAACAAAGACAGGTGATCGTGAAAAGTTTGAAGATTTTTTCATGAAGCATTTTCCAAGCATAGTACCTTTATTGGCCCTGATGGCATTTTTTACCCTTTCACATGGTCCTCCCGAACAACAGCAGATCAGCTTTCAGGAGTTTAAAAATAAGCTTTTGGAACCAGGCTTAGTAGATCATATTGTTGTTTCAAATAAGTCAGTTGCCAAAGTATATGTAAGGAGCTCTCATCATAACCTAGCAGATGGTGAAGTTGTCCAAGATACTCTCCCTGGACAAAGAAGTGGTGGCCAATATATGTATTATTTCAATATTGGAAGTGTTGAGTCTTTTGAGGAGAAGTTAGAGGAAGCGCAAGAAGGTCTAGGCATTGACCCTCATGATTATGTTCCGGTTACATATTCTTCTGAAATGATTTTGTTCCAGGAATTGTGGAGATTTATTCCTACATTGATATTTTTGGGAACTGTTCTCTATATGGGAAGGAAAATGCAAGGTGGGCTTGGTGCTGGTGGTCCTAGTGGCGGTAAGAGCGATCGTGGCATATTCAATATAGGAAAAGCCCATGTTACCAAAGTAGACAAAAATGCCAAAAACAAGGTTTTTTTCAAAGATGTTGCTGGATGTGATGAGGCAAAGCAAGAAATTATGGAGTTTGTCCACTTCCTCAAGAGCCCAAAGAAATATGAAGAACTTGGTGCAAAAATTCCTAAAGGTGCACTTTTGGTGGGTCCTCCTGGCACAGGAAAAACCCTTTTAGCAAAAGCAACTGCAGGAGAATCTGGTGTCCCCTTTCTTTCTATATCTGGTTCTGATTTCATGGAAATGTTTGTTGGTGTTGGACCATCCAGGGTGAGAAACTTGTTTCAGGAAGCAAGGCAGTGTGCTCCCAGTATAATATTTATTGATGAGATTGATGCAATTGGTCGAGCAAGGGGACGTGGAGGTCTCTCTGGTTCGAATGATGAGCGTGAAAGTACGTTGAATCAATTGTTGGTGGAGATGGATGGTTTTGGAACCACTGCTGGGGTTGTTGTACTTGCAGGAACAAATAGACCCGATATCTTAGACAAAGCTCTACTTAGGCCTGGGCGATTTGACCGCCAGATAACCATTGATAAGCCTGATATTAAAGGCCGTGACCAGATATTTCAGGTCTACTTGAAAAAGATCAAACTTGACCATGAACCTTCATATTTTTCACAAAGGCTTGCGGCGCTTACCCCCGGATTTGCTGGTGCAGACATTGCTAATGTTTGTAATGAAGCTGCTCTGATTGCTGCAAGAGGTGAGCAAAGACAAGTGACAATGGAACATTTCGAGGCAGCTATTGATAGGATCATTGGCGGTCTGGAGAAGAGGAACAAGGTAATAAGCAAGCTTGAAAGGCGTACTGTTGCTTATCATGAATCAGGCCATGCTGTTGCAGGCTGGTTCTTGGAACATGCCGAACCTTTACTGAAAGTAACCATAGTTCCTCGTGGCACAGCAGCTCTTGGATTTGCCCAGTATGTTCCAAATGAGAACCTTCTCATGACAAAGGAGCAGCTTTTTGATATGACTTGCATGACTCTTGGTGGCCGGGCTGCTGAGCAGGTTCTCATTGGGAGAATCTCAACCGGAGCTCAAAATGACTTGGAAAAGGTGACCAAGATGACATATGCACAAGTTGCGGTCTATGGTTTTAGTGACAAAGTTGGCCTTCTCTCTTTCCCACAACGAGATGACACATTTGAGATGTCGAAACCATACAGCAGCAAGACTGCTGCAATCATTGATAATGAAGTGCGCGAATGGGTAGGCAAAGCATATGAACGAACAATACATCTCATAGAGGAACACAAGGAACAAGTGACTAAAATTGCAGAGTTGCTTCTTGAAAAAGAGGTGCTTCACCAAGATGACATGGTTCGAGTTTTGGGAGAACGGCCATTCAAGTCTGCCGAACCCACCAATTATGATAGATTTAAGCAAGGTTTTCAGGAGGAGGGGGGAAAGATAATAGAAAGACCTGTCAATGACCCCGAGGAGAGTGGCGGATCTTCACCTTTAGATCCCCAGGTTGTTCTCACATAG 2427 0.431 MIFSRIGSSLSRSSRARNLLQGNGKFGTLVGALRINGASYSDGGENGLGFLRGYIAPASNGFNSNFSDLKSIGESRRLLRLFSSEAPKKKNYENFFPKEKKEVPKRDESKQESKDDSKTKTGDREKFEDFFMKHFPSIVPLLALMAFFTLSHGPPEQQQISFQEFKNKLLEPGLVDHIVVSNKSVAKVYVRSSHHNLADGEVVQDTLPGQRSGGQYMYYFNIGSVESFEEKLEEAQEGLGIDPHDYVPVTYSSEMILFQELWRFIPTLIFLGTVLYMGRKMQGGLGAGGPSGGKSDRGIFNIGKAHVTKVDKNAKNKVFFKDVAGCDEAKQEIMEFVHFLKSPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGLSGSNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYFSQRLAALTPGFAGADIANVCNEAALIAARGEQRQVTMEHFEAAIDRIIGGLEKRNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLMTKEQLFDMTCMTLGGRAAEQVLIGRISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSFPQRDDTFEMSKPYSSKTAAIIDNEVREWVGKAYERTIHLIEEHKEQVTKIAELLLEKEVLHQDDMVRVLGERPFKSAEPTNYDRFKQGFQEEGGKIIERPVNDPEESGGSSPLDPQVVLT* 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g0228 808 Gene3D - 492 568 - -
Lan7g0228 808 Pfam ATPase family associated with various cellular activities (AAA) 358 490 IPR003959 GO:0005524|GO:0016887
Lan7g0228 808 Gene3D - 146 255 - -
Lan7g0228 808 Gene3D Peptidase M41 574 775 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Lan7g0228 808 PANTHER ATP-DEPENDENT PROTEASE 43 806 - -
Lan7g0228 808 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 10, MITOCHONDRIAL-LIKE 43 806 - -
Lan7g0228 808 MobiDBLite consensus disorder prediction 93 122 - -
Lan7g0228 808 Pfam Peptidase family M41 574 755 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Lan7g0228 808 MobiDBLite consensus disorder prediction 776 790 - -
Lan7g0228 808 SMART AAA_5 353 493 IPR003593 -
Lan7g0228 808 Pfam FtsH Extracellular 138 244 IPR011546 GO:0004176|GO:0004222|GO:0005524|GO:0008270|GO:0016021
Lan7g0228 808 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 317 564 IPR027417 -
Lan7g0228 808 Pfam AAA+ lid domain 520 559 IPR041569 -
Lan7g0228 808 Gene3D - 301 490 IPR027417 -
Lan7g0228 808 SUPERFAMILY FtsH protease domain-like 574 764 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Lan7g0228 808 CDD AAA 354 491 - -
Lan7g0228 808 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 258 757 IPR005936 GO:0004176|GO:0004222|GO:0016020
Lan7g0228 808 MobiDBLite consensus disorder prediction 768 808 - -
Lan7g0228 808 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 12 795 IPR005936 GO:0004176|GO:0004222|GO:0016020
Lan7g0228 808 ProSitePatterns AAA-protein family signature. 461 479 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g0228 Lan-Chr7 1416282 1421444 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan7g0228 1 808 Miscellaneous Gene Families AT2G29080 73.407 0.0 1126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan7g0228 K08956 - gmx:100806656 1241.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0228 7 1416282 1421444 Lan7g0228 7 1416282 1421444 ECH
Lan7g0228 7 1416282 1421444 Lan8g1730 8 24054588 24061152 LSH
Lan7g0228 7 1416282 1421444 Lan13g0317 13 2084257 2089311 LSH