Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1665 ATGTATAAGAACCAGCTTCAGGAGCTGGCACAGCGAAGCTGTTTCAATCTCCCATCCTACACGTGCATTCGGGAAGGTCCCGATCACGCGCCGAGGTTCAAAGCCACCGTTAACTTCAACGCCGAGATCTTCGAGAGCCCTCACTATTGCACCACGCTTCGCCAGGCGGAGCACTCCGCCGCTGAGGTTGCCCTCAACTCCCTCTCCCACCGTGGACCCTCTCACTCCCTTGCCGCTAGAATCCTCGATGAGACAGGAGTCTATAAGAACCTCTTACAGGAAATTGCACAAAGGGTAGGGGCTCCACTGCCACAGTACACAACATTCAGGTCGGGCCTAGGACACCTACCTGTTTTTACCGGGACAGTTGAATTGGCTGGAATCACATTTACTGGTGAACCTGCCAAGAATAAGAAACAAGCAGAGAAAAATGCAGCTATGGCAGCTTGGTCATATCTAAAACAATTGGCAAAAGAAACTGCAGGCTCTTCAACTGAACCAGAGAACAATGACGAGCTAGAACAGATCACAATAGCGAGGGCCTTACTGAACTACCGTTTGAAGGAAAAGATAGCCATGTCAAATCCAAATGCTCCAATTCCATTTCCAAAGAGGTTTCAGTTTCAAAATTCCAGGCCTACCAGTCCCCAACCCGCACCTGCTGCTACATCAAAGATACTTCCCTTAATTTGCCCAAAGACTGTACCTCGAAGCAGGCATTCTTTCACAACATCAAATGAAAGTCCTCGAATCAGGCATCCAGTAGCAGCAGCAGCTGCCAGTGACAATCCTATGAACTCACCTTTCTCTTGTGCACTAGAAAGCCGAGGGACCAATCGCCCAAAGTTCCCTGCAGTAGGAGCAGCACCTTATGTTCCCATCAGACAAATGCGTTCACCTTGCCAGGGTATTGCACCTCCGGTTACTATAAGGACTGCAATACCTGTATTCTCTGCACCACCACTACCACCTCCCGCCATGATGGCCCATCAAGTAATGCGAGCGCCTCCTGTACGAGTTGCTCCTTCGGTCAACATTCGCCAAGCTGTTCCAGTATATGCTGCTTCACCACCAGTTCGAAAAGATGAACCTGTTCCCATCCGAGAAGACGATCCACCAGCAGCTATTACTGTGCCTAGCCAGGAAGATAAGCTGCCTGCCACCGTCGAGGAAGATAAACTGCCTGCCACCATCGAGGAAGATAAACTGCCTGCCACCTTCGAGGATGGTAAACTGCTAGGTAAAAGTCAGGAGATGGACAGCAAAACTCAGAACATTCCACCAGAATCTGAGACAGTGCAGAGCTTGGAACAGCTAAAAATCCGAAGTTCGTTGGAGTAG 1341 0.4981 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNAEIFESPHYCTTLRQAEHSAAEVALNSLSHRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFTGTVELAGITFTGEPAKNKKQAEKNAAMAAWSYLKQLAKETAGSSTEPENNDELEQITIARALLNYRLKEKIAMSNPNAPIPFPKRFQFQNSRPTSPQPAPAATSKILPLICPKTVPRSRHSFTTSNESPRIRHPVAAAAASDNPMNSPFSCALESRGTNRPKFPAVGAAPYVPIRQMRSPCQGIAPPVTIRTAIPVFSAPPLPPPAMMAHQVMRAPPVRVAPSVNIRQAVPVYAASPPVRKDEPVPIREDDPPAAITVPSQEDKLPATVEEDKLPATIEEDKLPATFEDGKLLGKSQEMDSKTQNIPPESETVQSLEQLKIRSSLE* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1665 446 Gene3D - 84 154 - -
Lan8g1665 446 Gene3D - 2 83 - -
Lan8g1665 446 PANTHER DOUBLE-STRANDED RNA-BINDING PROTEIN 2 1 441 - -
Lan8g1665 446 MobiDBLite consensus disorder prediction 361 446 - -
Lan8g1665 446 MobiDBLite consensus disorder prediction 385 416 - -
Lan8g1665 446 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1 70 IPR014720 -
Lan8g1665 446 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 87 155 IPR014720 -
Lan8g1665 446 PANTHER - 1 441 - -
Lan8g1665 446 SUPERFAMILY dsRNA-binding domain-like 88 158 - -
Lan8g1665 446 MobiDBLite consensus disorder prediction 417 446 - -
Lan8g1665 446 Pfam Double-stranded RNA binding motif 2 68 IPR014720 -
Lan8g1665 446 Pfam Double-stranded RNA binding motif 88 153 IPR014720 -
Lan8g1665 446 CDD DSRM_AtDRB-like_rpt2 86 154 IPR044451 GO:0003725
Lan8g1665 446 CDD DSRM_AtDRB-like_rpt1 1 69 IPR044450 GO:0003725
Lan8g1665 446 SUPERFAMILY dsRNA-binding domain-like 2 68 - -
Lan8g1665 446 SMART DRBM_3 2 69 IPR014720 -
Lan8g1665 446 SMART DRBM_3 88 154 IPR014720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1665 Lan-Chr8 23622847 23626923 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1665 - - gmx:100815739 595.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0301 7 1939695 1943633 Lan8g1665 8 23622847 23626923 LSH
Lan8g1665 8 23622847 23626923 Lan13g0381 13 2571848 2575503 LSH