Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g0301 ATGTATAAGAACCAGCTTCAGGAGCTGGCACAACGAAGCTGTTTCAACCTTCCATCCTACACGTGCATTAGGGAAGGTCCCGATCACGCGCCGAGGTTCAAAGCTACCGTTAACTTCAACGGCGAGATCTTCGAGAGTCCACACTACTGCACCACTCTGCGCCAGGCGGAACACTCCGCCGCAGAGGTTGCCCTCAACAACCTCTCCCACCGTGGACCCTCGCACTCCCTCGCCGCCAGAATCCTCGATGAGACAGGAGTCTACAAGAATCTCTTACAAGAAATTGCACAAAGGGTAGGGGCACCATTGCCACAGTACACAACGTTCAGATCAGGCCTAGGGCACCTACCTGTTTTTACTGGGATTGTAGAATTGGCCAGAATCACATTCACTGGGGAACCTGCCAAGAATAAAAAACAAGCAGAGAAAAATGCAGCTATGGCAGCTTGGTCATCTCTAAAACAATTGGCAAAAGAAACTGTGAGCTCGTCAACTGAACCAGAGAACAATGAGGAGCTAGAACAGATCACAATAGCGAGGGCCTTACTAAACTACCGTTTGAAGGAAAAGATAGCAATGTCAAATCCAAATGCTCCAATTCCATTTCCAAAGAGGTTTCAGATTCATAATTCCAGGCCAACCAGTCCTCAACCTCGACCCGCTGCTACTTCGAAGATACTTCCCTTAATTTGCCCGAAGATAGTACCTCGAAACAGGCATTCCTTGACAACATCAAATGAAAGTACTCAAAGCAGGCATCCAGTAGCTGCAGCAGCTGCCGGTGACAATCCTATGAAATCACCTTTCTCTTGTACACTAGAAAGCCGAGGGACCCATCGCCCGAAGTTCCCTGCAGTAGGAGCAGCACCTTATGTTCCCATTAGACAAATAAGACCATTTTGTCAGGGTATTGCGCCTCCGGTTACGATAAGGACTGCAGTACCTGTATTCTCTGCACCACCAGCCATGATGTCTCATCAAGTAATGCGGGCACCTCCTGTACAAGTTGCTCCCTCAGTCAATATTCGCCAAGCTGTTCCAGTATATGCTGCTCCACCATCAGTTCAAAAAGTGGAACCTGTTCCCATCCAAAAAGACGACCCAACAGCCGCTACTACTGTCCCTAGCCAGGAAGATAAACTGCCTGCGATAAGCCCGGAGGATAAACTGCCTGCCACCAGCGAGGAAGTTAAACAACCTACTACCAGCCAGGAAGATGCGCTGCCAGCTAAAAATCAGAAGACATACACCAAAACTGAGAACGTTCCACCAGAACCCGAGACAGTGCAGAGCTTGGAGCAGCTGAAAATTTGA 1314 0.4886 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCTTLRQAEHSAAEVALNNLSHRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFTGIVELARITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETVSSSTEPENNEELEQITIARALLNYRLKEKIAMSNPNAPIPFPKRFQIHNSRPTSPQPRPAATSKILPLICPKIVPRNRHSLTTSNESTQSRHPVAAAAAGDNPMKSPFSCTLESRGTHRPKFPAVGAAPYVPIRQIRPFCQGIAPPVTIRTAVPVFSAPPAMMSHQVMRAPPVQVAPSVNIRQAVPVYAAPPSVQKVEPVPIQKDDPTAATTVPSQEDKLPAISPEDKLPATSEEVKQPTTSQEDALPAKNQKTYTKTENVPPEPETVQSLEQLKI* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g0301 437 SUPERFAMILY dsRNA-binding domain-like 2 68 - -
Lan7g0301 437 Pfam Double-stranded RNA binding motif 2 68 IPR014720 -
Lan7g0301 437 Pfam Double-stranded RNA binding motif 88 153 IPR014720 -
Lan7g0301 437 SMART DRBM_3 2 69 IPR014720 -
Lan7g0301 437 SMART DRBM_3 88 154 IPR014720 -
Lan7g0301 437 MobiDBLite consensus disorder prediction 395 437 - -
Lan7g0301 437 MobiDBLite consensus disorder prediction 359 437 - -
Lan7g0301 437 Gene3D - 84 154 - -
Lan7g0301 437 SUPERFAMILY dsRNA-binding domain-like 88 161 - -
Lan7g0301 437 CDD DSRM_AtDRB-like_rpt2 86 154 IPR044451 GO:0003725
Lan7g0301 437 CDD DSRM_AtDRB-like_rpt1 1 69 IPR044450 GO:0003725
Lan7g0301 437 Gene3D - 2 83 - -
Lan7g0301 437 PANTHER - 1 437 - -
Lan7g0301 437 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 87 155 IPR014720 -
Lan7g0301 437 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1 70 IPR014720 -
Lan7g0301 437 PANTHER DOUBLE-STRANDED RNA-BINDING PROTEIN 2 1 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g0301 Lan-Chr7 1939695 1943633 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan7g0301 - - gmx:100816445 607.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0301 7 1939695 1943633 Lan7g0301 7 1939695 1943633 ECH
Lan7g0301 7 1939695 1943633 Lan8g1665 8 23622847 23626923 LSH
Lan7g0301 7 1939695 1943633 Lan13g0381 13 2571848 2575503 LSH