Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1588 ATGGCGATCCTATACGCCTTGGTGGCGAGAGGTACGGTGGTGCTAGCCGAGTTCAGCGCCGTCACTGGAAACCCGGGCGCCGTGGCCCGCCGTTTACTCGAGAAGCTTCCGGCGGAGACTGATTCCAGGCTATGTTTCTCTCAGGATCGCTACATCTTTCACATACTCCGATCCGATGGCCTCACCTACCTCTGTATGGCCAACGATACCTTTGGAAGGAGAATCCCTTTTTCATACTTGGAAGATATCCAAATGAGGTTTATGAAGAACTATGGTAGAGTTGCCAATTACGCACCAGCTTATGCAATGAATGATGAGTTCTCAAGGGTCTTGCATCATCAAATGGAATTTTTTTCTAGCAATACTAGTACTGATACCCTCAACCGTGTGAGGGGTGAAGTTGGTGAGATACGAACTATCATGGTGGATAACATTGAGAAGATATTGGAGAGAGGTGACCGGATTGAACTTCTTGTTGATAAGACATCAACAATGCAAGACAATGCATTTCACTTTAGGAAGCAGTCAAAGCGCCTTCGAAGAGCTCTTTGGATGAAAAATTTCAAACTCCTGTTGCTATTGACTGTCTTGATTGTTCTCTTTCTTTACCTTATAATTGCTGCTTGTTGTGGAGGCCTTACTCTACCGTCGTGTAGATCCTAA 663 0.4555 MAILYALVARGTVVLAEFSAVTGNPGAVARRLLEKLPAETDSRLCFSQDRYIFHILRSDGLTYLCMANDTFGRRIPFSYLEDIQMRFMKNYGRVANYAPAYAMNDEFSRVLHHQMEFFSSNTSTDTLNRVRGEVGEIRTIMVDNIEKILERGDRIELLVDKTSTMQDNAFHFRKQSKRLRRALWMKNFKLLLLLTVLIVLFLYLIIAACCGGLTLPSCRS* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1588 220 ProSitePatterns Synaptobrevin signature. 144 163 IPR001388 GO:0016021|GO:0016192
Lan8g1588 220 PANTHER LONGIN-LIKE DOMAIN-CONTAINING PROTEIN-RELATED 1 219 - -
Lan8g1588 220 PANTHER SNARE PROTEINS 1 219 - -
Lan8g1588 220 CDD R-SNARE 125 184 - -
Lan8g1588 220 Gene3D Longin domain 1 124 - -
Lan8g1588 220 PRINTS Synaptobrevin signature 131 150 IPR001388 GO:0016021|GO:0016192
Lan8g1588 220 PRINTS Synaptobrevin signature 151 170 IPR001388 GO:0016021|GO:0016192
Lan8g1588 220 PRINTS Synaptobrevin signature 187 206 IPR001388 GO:0016021|GO:0016192
Lan8g1588 220 Pfam Regulated-SNARE-like domain 29 108 IPR010908 -
Lan8g1588 220 ProSiteProfiles Longin domain profile. 7 111 IPR010908 -
Lan8g1588 220 SUPERFAMILY SNARE fusion complex 121 188 - -
Lan8g1588 220 CDD Longin 4 118 IPR010908 -
Lan8g1588 220 Gene3D - 125 209 - -
Lan8g1588 220 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 126 186 IPR042855 -
Lan8g1588 220 Pfam Synaptobrevin 124 211 IPR042855 -
Lan8g1588 220 SUPERFAMILY SNARE-like 3 117 IPR011012 -
Lan8g1588 220 SMART Longin_2 28 110 IPR010908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1588 Lan-Chr8 22900289 22903024 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1588 1 220 Miscellaneous Gene Families AT5G22360 83.258 1.70e-139 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1588 K08515 - gmx:100808089 399.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0374 7 2546923 2550334 Lan8g1588 8 22900289 22903024 LSH
Lan8g1588 8 22900289 22903024 Lan13g0437 13 3162909 3179182 LSH